Name: Streptomyces indonesiensis A4R2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16353

Type strain:

Species: Streptomyces indonesiensis

Strain Designation: A4R2

Culture col. no.: DSM 41759, NCIMB 13673, JCM 11445, NBRC 100776, NRRL B-24278

Strain history: NCIMB 13673 <-- M. Goodfellow A4R2.

NCBI tax ID(s): 114700 (species)

SI-ID 50105

DSM 41759, NCIMB 13673, JCM 11445, NBRC 100776, NRRL B-24278

Section

Streptomyces indonesiensis A4R2 is a spore-forming, mesophilic bacterium that was isolated from rhizoplane of Paraserianthes falcataria.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces indonesiensis**
	Full Scientific Name (LPSN)	Streptomyces indonesiensis Sembiring et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.046

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #10552]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10552]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10552]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10552]	Sample type/isolated from	rhizoplane of Paraserianthes falcataria
[Ref.: #10552]	Host species	Paraserianthes falcataria
[Ref.: #10552]	Geographic location (country and/or sea, region)	Java, Yogyakarta
[Ref.: #10552]	Country	Indonesia
[Ref.: #10552]	Country ISO 3 Code	IDN
[Ref.: #10552]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of the tropical legume, Paraserianthes falcataria
[Ref.: #67770]	Host species	Paraserianthes falcataria
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yogyakarta
[Ref.: #67770]	Country	Indonesia
[Ref.: #67770]	Country ISO 3 Code	IDN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizoplane

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ244467 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	48
Animal Samples	7
Plant Samples	53
Total Samples	109

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces sp. A4R2 (S34) partial 16S rRNA gene	AJ391835	1481	ENA	114700 tax ID
[Ref.: #20218]	Streptomyces indonesiensis strain DSM 41759 16S ribosomal RNA gene, partial sequence	DQ334783	1489	ENA	114700 tax ID	*
[Ref.: #20218]	Streptomyces indonesiensis strain DSM 41759 16S ribosomal RNA gene, partial sequence	FJ406119	1362	ENA	114700 tax ID	*
[Ref.: #20218]	Streptomyces indonesiensis strain DSM 41759 16S ribosomal RNA gene, partial sequence	HQ244467	1377	ENA	114700 tax ID	*
[Ref.: #20218]	Streptomyces indonesiensis gene for 16S rRNA, partial sequence, strain: NBRC 100776	AB249963	1408	ENA	114700 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces indonesiensis DSM 41759	GCA_018138705	contig	GenBank	114700 tax ID	*
[Ref.: #66792]	Streptomyces indonesiensis strain DSM 41759	114700.3	wgs	PATRIC	114700 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces indonesiensis strain DSM 41759 PATRIC: 114700.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces indonesiensis strain DSM 41759 PATRIC: 114700.3
[Ref.: #69480]	motile	no	92.897	no
[Ref.: #69480]	gram-positive	yes	88.902	no
[Ref.: #69480]	anaerobic	no	99.149	no
[Ref.: #69480]	aerobic	yes	93.621	no
[Ref.: #69480]	halophile	no	91.93	no
[Ref.: #69480]	spore-forming	yes	96.065	no
[Ref.: #69480]	flagellated	no	97.869	no
[Ref.: #69480]	thermophile	no	97.823	yes
[Ref.: #69480]	glucose-util	yes	90.54	no
[Ref.: #69480]	glucose-ferment	no	89.068	no

Availability in culture collections External links

[Ref.: #10552]

Culture collection no.

DSM 41759, NCIMB 13673, JCM 11445, NBRC 100776, NRRL B-24278

[Ref.: #85408]

SI-ID 50105

References

#10552

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41759

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85408

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50105.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces indonesiensis strain DSM 41759

Streptomyces indonesiensis strain DSM 41759

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