Strain identifier
BacDive ID: 16354
Type strain: 
Species: Streptomyces rhizosphaericus
Strain Designation: A10P1
Strain history: NCIMB 13674 <-- M. Goodfellow A10P1.
NCBI tax ID(s): 114699 (species)
version 9.3 (current version)
General
@ref: 10553
BacDive-ID: 16354
DSM-Number: 41760
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic
description: Streptomyces rhizosphaericus A10P1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from ectorhizosphere of Paraserianthes falcataria.
NCBI tax id
- NCBI tax id: 114699
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10553 | <- M. Goodfellow, Univ. Newcastle; A10P1 |
| 67770 | NCIMB 13674 <-- M. Goodfellow A10P1. |
doi: 10.13145/bacdive16354.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces rhizosphaericus
- full scientific name: Streptomyces rhizosphaericus corrig. Sembiring et al. 2001
synonyms
- @ref: 20215
- synonym: Streptomyces rhizosphaerius
@ref: 10553
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces rhizosphaericus
full scientific name: Streptomyces rhizosphaericus Sembiring et al. 2001
strain designation: A10P1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.8 | |
| 125439 | 92.8 | no |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10553 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10553 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 10553 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 10553 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 91.102 |
| 125439 | obligate aerobe | 95.9 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 93.621 |
| 125439 | yes | 92.7 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 10553 | ectorhizosphere of Paraserianthes falcataria | Paraserianthes falcataria | Java, Yogyakarta | Indonesia | IDN | Asia |
| 67770 | Rhizosphere of the tropical legume, Paraserianthes falcataria | Paraserianthes falcataria | Yogyakarta | Indonesia | IDN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_1102.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_303;99_1102&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB249941
- Sequence Identity:
- Total samples: 109
- soil counts: 48
- aquatic counts: 1
- animal counts: 7
- plant counts: 53
Safety information
risk assessment
- @ref: 10553
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces sp. A10P1 (S27) partial 16S rRNA gene | AJ391834 | 1480 | nuccore | 114699 |
| 20218 | Streptomyces rhizosphaericus strain DSM 41760 16S ribosomal RNA gene, partial sequence | FJ406121 | 1362 | nuccore | 114699 |
| 20218 | Streptomyces rhizosphaericus gene for 16S rRNA, partial sequence, strain: NBRC 100778 | AB249941 | 1482 | nuccore | 114699 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces rhizosphaericus DSM 41760 | GCA_017942185 | contig | ncbi | 114699 |
| 66792 | Streptomyces rhizosphaericus strain DSM 41760 | 114699.5 | wgs | patric | 114699 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.425 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.535 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 93.621 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.102 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 92.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 95.9 |
External links
@ref: 10553
culture collection no.: DSM 41760, NCIMB 13674, JCM 11447, MTCC 6923, NBRC 100778
straininfo link
- @ref: 85409
- straininfo: 50106
literature
- topic: Phylogeny
- Pubmed-ID: 28829023
- title: Streptomyces solisilvae sp. nov., isolated from tropical forest soil.
- authors: Zhou S, Yang X, Huang D, Huang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002166
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10553 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41760) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41760 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85409 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50106.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |