Strain identifier

BacDive ID: 16354

Type strain: Yes

Species: Streptomyces rhizosphaericus

Strain Designation: A10P1

Strain history: NCIMB 13674 <-- M. Goodfellow A10P1.

NCBI tax ID(s): 114699 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7 (current version):
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7 (current version)

General

@ref: 10553

BacDive-ID: 16354

DSM-Number: 41760

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Streptomyces rhizosphaericus A10P1 is a mesophilic bacterium that was isolated from ectorhizosphere of Paraserianthes falcataria.

NCBI tax id

  • NCBI tax id: 114699
  • Matching level: species

strain history

doi: 10.13145/bacdive16354.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces rhizosphaericus
  • full scientific name: Streptomyces rhizosphaericus corrig. Sembiring et al. 2001
  • synonyms

    • @ref: 20215
    • synonym: Streptomyces rhizosphaerius

@ref: 10553

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces rhizosphaericus

full scientific name: Streptomyces rhizosphaericus Sembiring et al. 2001

strain designation: A10P1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10553GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://bacmedia.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10553ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://bacmedia.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10553STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://bacmedia.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l CaCO3 1.998 g/l (NH4)2SO4 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10553positivegrowth28mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
10553ectorhizosphere of Paraserianthes falcatariaParaserianthes falcatariaJava, YogyakartaIndonesiaIDNAsia
67770Rhizosphere of the tropical legume, Paraserianthes falcatariaParaserianthes falcatariaYogyakartaIndonesiaIDNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 10553
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces sp. A10P1 (S27) partial 16S rRNA geneAJ3918341480ena114699
20218Streptomyces rhizosphaericus strain DSM 41760 16S ribosomal RNA gene, partial sequenceFJ4061211362ena114699
20218Streptomyces rhizosphaericus gene for 16S rRNA, partial sequence, strain: NBRC 100778AB2499411482ena114699

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces rhizosphaericus DSM 41760GCA_017942185contigncbi114699
66792Streptomyces rhizosphaericus strain DSM 41760114699.5wgspatric114699

External links

@ref: 10553

culture collection no.: DSM 41760, NCIMB 13674, JCM 11447, MTCC 6923, NBRC 100778

straininfo link

@refpassport
20218http://www.straininfo.net/strains/167481
20218http://www.straininfo.net/strains/167482

literature

  • topic: Phylogeny
  • Pubmed-ID: 28829023
  • title: Streptomyces solisilvae sp. nov., isolated from tropical forest soil.
  • authors: Zhou S, Yang X, Huang D, Huang X
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002166
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10553Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41760)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41760
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/