Archive BacDiveID:10.13145/bacdive16354.20230509.8.1

Strain identifier

BacDive ID: 16354

Type strain:

Species: Streptomyces rhizosphaericus

Strain Designation: A10P1

Strain history: NCIMB 13674 <-- M. Goodfellow A10P1.

NCBI tax ID(s): 114699 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 10553

BacDive-ID: 16354

DSM-Number: 41760

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces rhizosphaericus A10P1 is a spore-forming, mesophilic bacterium that was isolated from ectorhizosphere of Paraserianthes falcataria.

NCBI tax id

NCBI tax id: 114699
Matching level: species

strain history

@ref	history
10553	<- M. Goodfellow, Univ. Newcastle; A10P1
67770	NCIMB 13674 <-- M. Goodfellow A10P1.

doi: 10.13145/bacdive16354.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Kitasatosporales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces rhizosphaericus
full scientific name: Streptomyces rhizosphaericus corrig. Sembiring et al. 2001
synonyms
- @ref: 20215
- synonym: Streptomyces rhizosphaerius

@ref: 10553

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces rhizosphaericus

full scientific name: Streptomyces rhizosphaericus Sembiring et al. 2001

strain designation: A10P1

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	94.335
69480		100	positive

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
10553	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10553	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10553	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://mediadive.dsmz.de/medium/252	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
10553	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	yes	100
69480	yes	100

Isolation, sampling and environmental information

isolation

@ref	sample type	host species	geographic location	country	origin.country	continent
10553	ectorhizosphere of Paraserianthes falcataria	Paraserianthes falcataria	Java, Yogyakarta	Indonesia	IDN	Asia
67770	Rhizosphere of the tropical legume, Paraserianthes falcataria	Paraserianthes falcataria	Yogyakarta	Indonesia	IDN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

taxonmaps

@ref: 69479
File name: preview.99_1102.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_303;99_1102&stattab=map
Last taxonomy: Streptomyces
16S sequence: AB249941
Sequence Identity:
Total samples: 109
soil counts: 48
aquatic counts: 1
animal counts: 7
plant counts: 53

Safety information

risk assessment

@ref: 10553
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Streptomyces sp. A10P1 (S27) partial 16S rRNA gene	AJ391834	1480	ena	114699
20218	Streptomyces rhizosphaericus strain DSM 41760 16S ribosomal RNA gene, partial sequence	FJ406121	1362	ena	114699
20218	Streptomyces rhizosphaericus gene for 16S rRNA, partial sequence, strain: NBRC 100778	AB249941	1482	ena	114699

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Streptomyces rhizosphaericus DSM 41760	GCA_017942185	contig	ncbi	114699
66792	Streptomyces rhizosphaericus strain DSM 41760	114699.5	wgs	patric	114699

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	yes	100	no
motile	no	93.823	no
gram-positive	yes	88.458	no
anaerobic	no	99.073	no
aerobic	yes	93.026	no
halophile	no	91.721	no
spore-forming	yes	95.651	no
flagellated	no	97.961	no
glucose-util	yes	90.489	no
thermophile	no	98.497	no
glucose-ferment	no	89.663	no

External links

@ref: 10553

culture collection no.: DSM 41760, NCIMB 13674, JCM 11447, MTCC 6923, NBRC 100778

straininfo link

@ref: 85409
straininfo: 50106

literature

topic: Phylogeny
Pubmed-ID: 28829023
title: Streptomyces solisilvae sp. nov., isolated from tropical forest soil.
authors: Zhou S, Yang X, Huang D, Huang X
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.002166
year: 2017
mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate
topic2: Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
10553	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41760)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-41760
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
85409	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID50106.1	StrainInfo: A central database for resolving microbial strain identifiers

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

spore formation

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

Genome-based predictions

predictions

External links

straininfo link

literature

Reference