Streptomyces albospinus (DSM 41674, ATCC 29808, IFO 13846)

Name: Streptomyces albospinus (DSM 41674, ATCC 29808, IFO 13846)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16321

Type strain

Strain Designation IMC S-0602

Culture col. no. DSM 41674 ATCC 29808 IFO 13846 JCM 3399 NBRC 13846 6 more

NCBI tax ID(s) 285515

Special Collections DSMZ JCM KCTC Wink compendium

History <- JCM <- M. Hamada, M750-G1 M. Hamada M750-G1.

Links

Streptomyces albospinus IMC S-0602 is a spore-forming, mesophilic prokaryote that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production spore-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 39733

MTCC 6918,ATCC 29808,DSM 41674,IFO 13846,JCM 3399,NRRL B-16926,KCTC 9664,KCTC 9762,AS 4.1628,NBRC 13846,CGMCC 4.1896,CGMCC 4.1628

@ref 20215

Last LPSN update 2026-02-09 11:21:56

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces albospinus

Full scientific name Streptomyces albospinus Wang et al. 1966 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	93.7

Colony morphology

@ref	Colony color	Medium used
69295	Brown beige (1011), light ivory (1015)	ISP 5
69295	Brown beige (1011)	ISP 3
69295	Brown beige (1011)	ISP 4
69295	Beige (1001), oxide red (3009)	ISP 7
69295	Sand yellow (1002)	ISP 6
69295	Sand yellow (1002), brown beige (1011)	ISP 2
69295	Sparse, 9010 white	suter with tyrosine

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69295	Aerial mycelium	Signal white (9003)	ISP 2
69295	Aerial mycelium	Dusty grey (7037), pure white (9010)	ISP 3
69295	Aerial mycelium	Pure white (9010)	ISP 4
69295	Aerial mycelium	Telegrey 4 (7047), traffic white (9016)	ISP 5
69295	Aerial mycelium		ISP 6
69295	Aerial mycelium	Oyster white (1013), signal grey (7004)	ISP 7
69295	Aerial mycelium	Brown beige (1011)	suter with tyrosine

Pigmentation

@ref	Production	Color	Name
69295			melanin pigment
69295		Brown beige (1011)	soluble pigment

Multimedia

@ref:	69295
multimedia content:	DSM_41674_image3.jpeg
multimedia.multimedia content:	DSM_41674_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69295
multimedia content:	DSM_41674_image4.jpeg
multimedia.multimedia content:	DSM_41674_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10457	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10457	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10457	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10457	YEAST STARCH AGAR (A) (DSMZ Medium 1027)	Medium recipe at MediaDive	Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10457	positive	growth	28	mesophilic
19519	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.256
125439	facultative anaerobe	90.6

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
19519	Formation of spore chains: spirales, spore surface: spiny	spore
125439				91.2

Compound production

@ref	Compound
10457	spinamycine
67770	Spinamycin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69295	NaCl	positive	growth	0-5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69295	22599 ChEBI	arabinose	-	growth
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
69295	62968 ChEBI	cellulose	-	growth
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69295	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
69295	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69295	17268 ChEBI	inositol	+	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69295	37684 ChEBI	mannose	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
69295	16634 ChEBI	raffinose	-	growth
69295	26546 ChEBI	rhamnose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69295	17992 ChEBI	sucrose	-	growth
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
69295	18222 ChEBI	xylose	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	gelatinase	-		from API Coryne
68368	gelatinase	+		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68379	urease	+	3.5.1.5	from API Coryne
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19519	+	+	-	-	-	-	+	+	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69295	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69295	not determinedn.d.	+/-	+/-	+/-	+/-	+	+	+/-	+	-	+	+/-	-	-	-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10457	soil	Akita City	Japan	JPN	Asia
67770	Soil	Akita City	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10457	1	Risk group (German classification) According to TRBA 466
19519	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464869v1 assembly for Streptomyces albospinus JCM 3399	scaffold	GCA_014648695	285515.3	8073422889	285515	16

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces albospinus strain CGMCC 4.1628 16S ribosomal RNA gene, partial sequence	JN566023	1493	285515
20218	Streptomyces albospinus strain JCM 3399 16S ribosomal RNA gene, partial sequence	AY999753	1423	285515
20218	Streptomyces albospinus gene for 16S rRNA, partial sequence, strain: NBRC 13846	AB184527	1442	285515
124043	Streptomyces albospinus strain JCM 3399 16S ribosomal RNA gene, partial sequence.	MT760467	1380	285515

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces albospinus JCM 3399
NCBI: GCA_014648695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	91.20	no
125439	motility	BacteriaNetⓘ	no	83.20	no
125439	gram_stain	BacteriaNetⓘ	positive	93.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces albospinus JCM 3399
NCBI: GCA_014648695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.07	no
125438	anaerobic	anaerobicⓘ	no	97.03	no
125438	aerobic	aerobicⓘ	yes	92.26	no
125438	spore-forming	spore-formingⓘ	yes	86.81	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	no	87.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Isolated from Populus euphratica rhizosphere soil, and mining their metabolites.	Zhang JX, Chen YH, Luo X, Zhang LL, Luo XX.	Front Microbiol	10.3389/fmicb.2025.1530786	2025
Phylogeny	Isolation and Evaluation of Rhizosphere Actinomycetes With Potential Application for Biocontrolling Fusarium Wilt of Banana Caused by Fusarium oxysporum f. sp. cubense Tropical Race 4.	Zhang L, Zhang H, Huang Y, Peng J, Xie J, Wang W	Front Microbiol	10.3389/fmicb.2021.763038	2021
Genetics	Streptomyces phytophilus sp. nov., an endophytic actinobacterium with biosynthesis potential as an antibiotic producer.	Kaewkla O, Suriyachadkun C, Franco CMM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005834	2023

References

#10457	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41674
#19519	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69295	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces albospinus (DSM 41674, ATCC 29808, IFO 13846)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014648695

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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