Strain identifier

BacDive ID: 16321

Type strain: Yes

Species: Streptomyces albospinus

Strain Designation: IMC S-0602

Strain history: M. Hamada M750-G1.

NCBI tax ID(s): 285515 (species)

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General

@ref: 10457

BacDive-ID: 16321

DSM-Number: 41674

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces albospinus IMC S-0602 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 285515
  • Matching level: species

strain history

@refhistory
10457<- JCM <- M. Hamada, M750-G1
67770M. Hamada M750-G1.

doi: 10.13145/bacdive16321.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albospinus
  • full scientific name: Streptomyces albospinus Wang et al. 1966 (Approved Lists 1980)

@ref: 10457

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albospinus

full scientific name: Streptomyces albospinus Wang et al. 1966

strain designation: IMC S-0602

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no96.066
69480100positive

colony morphology

@refcolony colormedium used
69295Brown beige (1011), light ivory (1015)ISP 5
69295Brown beige (1011)ISP 3
69295Brown beige (1011)ISP 4
69295Beige (1001), oxide red (3009)ISP 7
69295Sand yellow (1002)ISP 6
69295Sand yellow (1002), brown beige (1011)ISP 2
69295Sparse, 9010 whitesuter with tyrosine

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69295yesAerial myceliumSignal white (9003)ISP 2
69295yesAerial myceliumDusty grey (7037), pure white (9010)ISP 3
69295yesAerial myceliumPure white (9010)ISP 4
69295yesAerial myceliumTelegrey 4 (7047), traffic white (9016)ISP 5
69295noAerial myceliumISP 6
69295yesAerial myceliumOyster white (1013), signal grey (7004)ISP 7
69295yesAerial myceliumBrown beige (1011)suter with tyrosine

pigmentation

@refproductionnamecolor
69295noMelanin
69295yessoluble pigmentBrown beige (1011)

multimedia

@refmultimedia contentcaptionintellectual property rights
69295DSM_41674_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69295DSM_41674_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10457GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10457ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10457STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10457YEAST STARCH AGAR (A) (DSMZ Medium 1027)yeshttps://mediadive.dsmz.de/medium/1027Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19519positiveoptimum28mesophilic
67770positivegrowth28mesophilic
10457positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore descriptiontype of sporespore formationconfidence
19519Formation of spore chains: spirales, spore surface: spinysporeyes
69481yes100
69480yes100

compound production

@refcompound
10457spinamycine
67770Spinamycin

halophily

  • @ref: 69295
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6929522599arabinose-growth
6929562968cellulose-growth
6929528757fructose+growth
6929517234glucose+growth
6929517268inositol+growth
6929537684mannose+growth
6929516634raffinose-growth
6929526546rhamnose-growth
6929517992sucrose-growth
6929518222xylose+growth
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69295---------+---------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69295+/-+/-+/-+/-+++/-+-++/------+/---

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19519++----+++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10457soilAkita CityJapanJPNAsia
67770SoilAkita CityJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
104571Risk group (German classification)
195191Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albospinus strain CGMCC 4.1628 16S ribosomal RNA gene, partial sequenceJN5660231493ena285515
20218Streptomyces albospinus strain JCM 3399 16S ribosomal RNA gene, partial sequenceAY9997531423ena285515
20218Streptomyces albospinus gene for 16S rRNA, partial sequence, strain: NBRC 13846AB1845271442ena285515

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces albospinus JCM 3399GCA_014648695scaffoldncbi285515
66792Streptomyces albospinus strain JCM 3399285515.3wgspatric285515

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.255no
gram-positiveyes90.278no
anaerobicno99.253no
aerobicyes92.619no
halophileno92.004no
spore-formingyes93.902no
thermophileno97.289yes
glucose-utilyes91.311yes
motileno94.482no
glucose-fermentno92.024no

External links

@ref: 10457

culture collection no.: DSM 41674, ATCC 29808, IFO 13846, JCM 3399, NBRC 13846, CGMCC 4.1628, KCTC 9664, KCTC 9762, MTCC 6918, NRRL B-16926

straininfo link

  • @ref: 85377
  • straininfo: 39733

literature

  • topic: Phylogeny
  • Pubmed-ID: 34759913
  • title: Isolation and Evaluation of Rhizosphere Actinomycetes With Potential Application for Biocontrolling Fusarium Wilt of Banana Caused by Fusarium oxysporum f. sp. cubense Tropical Race 4.
  • authors: Zhang L, Zhang H, Huang Y, Peng J, Xie J, Wang W
  • journal: Front Microbiol
  • DOI: 10.3389/fmicb.2021.763038
  • year: 2021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10457Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41674)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41674
19519Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM41674.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69295Wink, J.https://cdn.dsmz.de/wink/DSM%2041674.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85377Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39733.1StrainInfo: A central database for resolving microbial strain identifiers