Name: Streptomyces wedmorensis DSM 41676
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16322

Type strain:

Species: Streptomyces wedmorensis

Culture col. no.: DSM 41676, ATCC 21239, IFO 14062, JCM 4937, KCC S-0937, NBRC 14062, NRRL 3426, BCRC 12667, CBS 642.71, CECT 3245, ICMP 12544, NBIMCC 1655, VKM Ac-1861

Strain history: KCC S-0937 <-- Kyowa Hakko Kogyo Co., Ltd.; KY 2354 <-- NRRL 3426 <-- Merck Sharp & Dohme Res. Labs.; MA-3269.

NCBI tax ID(s): 43759 (species)

SI-ID 37379

ATCC 21239, NRRL 3426, IFO 14062, JCM 4937, CCRC 12667, NRRL B-3426, VKM Ac-1861, CBS 642.71, CECT 3245, NBRC 14062, ICMP 12544, BCRC 12667, NRRL 3246, NBIMCC 1655, CGMCC 4.1937, DSM 41676

Section

Streptomyces wedmorensis DSM 41676 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces wedmorensis**
	Full Scientific Name (LPSN)	Streptomyces wedmorensis (ex Milard and Burr 1926) Preobrazhenskaya 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.047

[Ref.: #19520]	Colony color	Beige
[Ref.: #19520]	Incubation period	10-14 days
[Ref.: #19520]	Cultivation medium used	ISP 6

[Ref.: #19520]	Colony color	Beige
[Ref.: #19520]	Incubation period	10-14 days
[Ref.: #19520]	Cultivation medium used	ISP 7

[Ref.: #19520]	Incubation period	10-14 days
[Ref.: #19520]	Cultivation medium used	ISP 2

[Ref.: #19520]	Incubation period	10-14 days
[Ref.: #19520]	Cultivation medium used	ISP 3

[Ref.: #19520]	Incubation period	10-14 days
[Ref.: #19520]	Cultivation medium used	ISP 4

[Ref.: #19520]	Incubation period	10-14 days
[Ref.: #19520]	Cultivation medium used	ISP 5

[Ref.: #19520]	Multicellular complex forming ability	yes
[Ref.: #19520]	Multicellular complex name	Aerial Mycelium
[Ref.: #19520]	Multicellular complex color	Dusty grey
[Ref.: #19520]	Medium Name (multicellularity)	ISP 2

[Ref.: #19520]	Multicellular complex forming ability	yes
[Ref.: #19520]	Multicellular complex name	Aerial Mycelium
[Ref.: #19520]	Multicellular complex color	Dusty grey
[Ref.: #19520]	Medium Name (multicellularity)	ISP 3

[Ref.: #19520]	Multicellular complex forming ability	yes
[Ref.: #19520]	Multicellular complex name	Aerial Mycelium
[Ref.: #19520]	Multicellular complex color	Dusty grey
[Ref.: #19520]	Medium Name (multicellularity)	ISP 4

[Ref.: #19520]	Multicellular complex forming ability	yes
[Ref.: #19520]	Multicellular complex name	Aerial Mycelium
[Ref.: #19520]	Multicellular complex color	Dusty grey
[Ref.: #19520]	Medium Name (multicellularity)	ISP 5

[Ref.: #19520]	Multicellular complex forming ability	no
[Ref.: #19520]	Medium Name (multicellularity)	ISP 6

[Ref.: #19520]	Multicellular complex forming ability	yes
[Ref.: #19520]	Multicellular complex name	Aerial Mycelium
[Ref.: #19520]	Multicellular complex color	Dusty grey
[Ref.: #19520]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Medium recipe at MediaDive

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Culture medium

ISP 2

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ISP 3

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ISP 4

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ISP 5

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ISP 6

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ISP 7

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Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

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ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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		Temperature
[Ref.: #10459]	growth	28 °C
[Ref.: #19520]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10459]	Temperature range	mesophilic
[Ref.: #19520]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10459]

Name of produced compound

phosphonomycin A and B

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19520]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #67770]	fosfomycin ChEBI
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19520]	377	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10459]	Sample type/isolated from	soil
[Ref.: #10459]	Geographic location (country and/or sea, region)	Pennsylvania
[Ref.: #10459]	Country	USA
[Ref.: #10459]	Country ISO 3 Code	USA
[Ref.: #10459]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	PA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ442557 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	336
Soil Samples	6254
Animal Samples	471
Plant Samples	2191
Total Samples	9252

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10459]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19520]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces wedmorensis gene for 16S rRNA, partial sequence, strain: NBRC 14062	AB184572	1470	ENA	43759 tax ID	*
[Ref.: #20218]	Streptomyces wedmorensis strain NRRL 3426T 16S ribosomal RNA gene, partial sequence	DQ442557	1490	ENA	43759 tax ID	*
[Ref.: #20218]	Streptomyces wedmorensis 16S ribosomal RNA gene, partial sequence	KC355422	667	ENA	43759 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces wedmorensis NRRL 3426	GCA_000716445	contig	GenBank	43759 tax ID
[Ref.: #66792]	Streptomyces wedmorensis strain NRRL 3426	43759.4	wgs	PATRIC	43759 tax ID	*
[Ref.: #66792]	Streptomyces wedmorensis NRRL 3426	2765235995	draft	JGI IMG/M	43759 tax ID	*

[Ref.: #67770]

GC-content

72.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces wedmorensis strain NRRL 3426 PATRIC: 43759.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces wedmorensis strain NRRL 3426 PATRIC: 43759.4
[Ref.: #69480]	gram-positive	yes	86.739	no
[Ref.: #69480]	anaerobic	no	99.325	no
[Ref.: #69480]	halophile	no	93.673	no
[Ref.: #69480]	spore-forming	yes	94.678	no
[Ref.: #69480]	glucose-util	yes	88.003	no
[Ref.: #69480]	aerobic	yes	92.204	no
[Ref.: #69480]	flagellated	no	97.55	no
[Ref.: #69480]	motile	no	93.546	no
[Ref.: #69480]	thermophile	no	99.206	yes
[Ref.: #69480]	glucose-ferment	no	86.494	no

Availability in culture collections External links

[Ref.: #10459]

Culture collection no.

DSM 41676, ATCC 21239, IFO 14062, JCM 4937, KCC S-0937, NBRC 14062, NRRL 3426, BCRC 12667, CBS 642.71, CECT 3245, ICMP 12544, NBIMCC 1655, VKM Ac-1861

[Ref.: #85378]

SI-ID 37379

References

#10459

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41676

#19520

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85378

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37379.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces wedmorensis strain NRRL 3426

Streptomyces wedmorensis strain NRRL 3426

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