Name: Streptomyces tuirus DSM 40505
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16219

Type strain:

Species: Streptomyces tuirus

Culture col. no.: DSM 40505, ATCC 19007, CBS 719.72, IFO 13418, ISP 5505, JCM 4846, NBRC 13418, RIA 1379, JCM 4255, BCRC 12217, CGMCC 4.1758, IFO 15617, NBRC 15617, NRRL B-3631

Strain history: KCC S-0255 <-- V. Q. Gonçalves de Lima 4564 (IAUR 3121).

NCBI tax ID(s): 68278 (species)

SI-ID 36806

ATCC 19007, IFO 13418, DSM 40505, JCM 4846, CCRC 12217, IFO 15617, NRRL B-3631, CBS 719.72, JCM 4255, NBRC 13418, NBRC 15617, BCRC 12217, CGMCC 4.1758

Special Collections

Other strains from Streptomyces tuirus

Section

Streptomyces tuirus DSM 40505 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces tuirus**
	Full Scientific Name (LPSN)	Streptomyces tuirus Albert and Malaquias de Querioz 1963 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9604]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9604]

Culture medium growth

[Ref.: #9604]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9604]

Culture medium composition

expand / minimize

[Ref.: #9604]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9604]

Culture medium growth

[Ref.: #9604]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9604]	growth	28 °C
[Ref.: #18602]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.368
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9604]	Name of produced compound	tuoromycin
[Ref.: #20216]	Name of produced compound	Tuoromycin
[Ref.: #67770]	Name of produced compound	Tuoromicin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18602]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18602]	157	+	+	+	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9604]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Piracicaba, São Paulo
[Ref.: #67770]	Country	Brazil
[Ref.: #67770]	Country ISO 3 Code	BRA
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF503493 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	12
Animal Samples	16
Plant Samples
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18602]	Biosafety level	1	German classification
[Ref.: #9604]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces tuirus 16S ribosomal RNA, partial sequence	AF503493	1455	GenBank ENA	68278 tax ID	*
[Ref.: #20218]	Streptomyces tuirus strain DSM 40505 16S ribosomal RNA gene, partial sequence	GU383129	780	GenBank ENA	68278 tax ID	*
[Ref.: #20218]	Streptomyces tuirus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4846	D44403	121	GenBank ENA	68278 tax ID	*
[Ref.: #20218]	Streptomyces tuirus gene for 16S rRNA, partial sequence, strain: NBRC 15617	AB184690	1460	GenBank ENA	68278 tax ID	*
[Ref.: #20218]	Streptomyces violaceoruber strain NRRL B-3631 16S ribosomal RNA gene, partial sequence	AY999733	1438	GenBank ENA	1935 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces tuirus JCM 4255	GCA_014701095	complete	GenBank ENA	68278 tax ID	*
[Ref.: #66792]	Streptomyces tuirus strain JCM 4255	68278.4	wgs	PATRIC	68278 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces tuirus JCM 4255 NCBI: GCA_014701095.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces tuirus JCM 4255 NCBI: GCA_014701095.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.38	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.058	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.379	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.368	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.978	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #9604]

Culture collection no.

DSM 40505, ATCC 19007, CBS 719.72, IFO 13418, ISP 5505, JCM 4846, NBRC 13418, RIA 1379, JCM 4255, BCRC 12217, CGMCC 4.1758, IFO 15617, NBRC 15617, NRRL B-3631

[Ref.: #85280]

SI-ID 36806

References

#9604

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40505

#18602

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85280

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36806.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces tuirus JCM 4255

Streptomyces tuirus JCM 4255

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