Streptomyces tuirus (DSM 40505, ATCC 19007, CBS 719.72)

Name: Streptomyces tuirus (DSM 40505, ATCC 19007, CBS 719.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16219

Type strain

Culture col. no. DSM 40505 ATCC 19007 CBS 719.72 IFO 13418 ISP 5505 9 more

NCBI tax ID(s) 68278

Special Collections DSMZ JCM Wink compendium

History <- E.B. Shirling, ISP (Streptoverticillium tuirum) <- ATCC <- IAUR 3121 KCC S-0255 <-- V. Q. Gonçalves de Lima 4564 (IAUR 3121).

Links

Streptomyces tuirus DSM 40505 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36806

ATCC 19007,IFO 13418,DSM 40505,JCM 4846,CCRC 12217,IFO 15617,NRRL B-3631,CBS 719.72,JCM 4255,NBRC 13418,NBRC 15617,BCRC 12217,CGMCC 4.1758

@ref 20215

Last LPSN update 2026-02-09 11:21:55

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces tuirus

Full scientific name Streptomyces tuirus Albert and Malaquias de Querioz 1963 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces tuirus** (2)	Type strain
127812	S. tuirus ST005122(HKI), ChinaN-581, IMET 40337
127813	S. tuirus ST005123(HKI), China, IMET 40338

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.6
125439		90.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9604	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9604	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9604	positive	growth	28
18602	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125439		90
125438		92.368

Compound production

@ref	Compound
9604	tuoromycin
20216	Tuoromycin
67770	Tuoromicin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18602	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18602	+	+	+	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9604	soil
67770	Soil	Piracicaba, São Paulo	Brazil	BRA	Middle and South America

Taxonmaps

69479

Global distribution of 16S sequence AF503493 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	12
Animal Samples	16
Plant Samples
Total Samples	28

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9604	1	Risk group (German classification) According to TRBA 466
18602	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1470109v1 assembly for Streptomyces tuirus JCM 4255	complete	GCA_014701095	68278.4	8110686235	68278	99.22
124043	ASM4243076v1 assembly for Streptomyces tuirus JCM 4255	scaffold	GCA_042430765			68278	73.13

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces tuirus 16S ribosomal RNA, partial sequence	AF503493	1455	68278
20218	Streptomyces tuirus strain DSM 40505 16S ribosomal RNA gene, partial sequence	GU383129	780	68278
20218	Streptomyces tuirus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4846	D44403	121	68278
20218	Streptomyces tuirus gene for 16S rRNA, partial sequence, strain: NBRC 15617	AB184690	1460	68278
20218	Streptomyces violaceoruber strain NRRL B-3631 16S ribosomal RNA gene, partial sequence	AY999733	1438	1935
124043	Streptomyces tuirus strain JCM 4255 16S ribosomal RNA gene, partial sequence.	MT760502	1313	68278

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces tuirus JCM 4255
NCBI: GCA_014701095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.00	no
125439	motility	BacteriaNetⓘ	no	90.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces tuirus JCM 4255
NCBI: GCA_014701095.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.38	no
125438	anaerobic	anaerobicⓘ	no	96.06	no
125438	aerobic	aerobicⓘ	yes	88.38	no
125438	spore-forming	spore-formingⓘ	yes	92.37	no
125438	thermophilic	thermophileⓘ	no	92.98	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Revisiting D-Acylases for D-Amino Acid Production.	Martinez-Rodriguez S, Gavira JA.	Microb Biotechnol	10.1111/1751-7915.70179	2025
	Biosynthetic Potential of Bioactive Streptomycetes Isolated From Arid Region of the Thar Desert, Rajasthan (India).	Masand M, Sivakala KK, Menghani E, Thinesh T, Anandham R, Sharma G, Sivakumar N, Jebakumar SRD, Jose PA.	Front Microbiol	10.3389/fmicb.2018.00687	2018
Phylogeny	Streptomyces mayonensis sp. nov., isolated from the volcanic soils of Mt. Mayon, Philippines.	Aguilar GM, Oliveros KMP, Rosana ARR, Opulencia RB, Raymundo AK.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006900	2025
	Streptomyces argyrophyllae sp. nov., isolated from the rhizosphere soil of Cathaya argyrophylla.	Mo P, Zhou F, Luo X, Zhang Y, Deng A, Xie P, Wang Y.	Arch Microbiol	10.1007/s00203-023-03668-9	2023

References

#9604	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40505
#18602	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces tuirus (DSM 40505, ATCC 19007, CBS 719.72)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014701095

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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