Streptomyces morookaensis SF-337 is an obligate aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and produces antibiotic compounds.
antibiotic compound production spore-forming Gram-positive filament-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces morookaensis |
| Full scientific name Streptomyces morookaensis corrig. (Locci and Schofield 1989 ex Niida et al. 1963) Witt and Stackebrandt 1991 |
| Synonyms (2) |
| @ref: | 9602 |
| multimedia content: | DSM_40503-1.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_40503-1.jpg |
| caption: | Medium 65 28°C |
| intellectual property rights: | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9602 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19813 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19813 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19813 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19813 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19813 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19813 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 33897 | MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum | Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g) | |||
| 9602 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | Medium recipe at MediaDive | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water | ||
| 121146 | CIP Medium 57 | Medium recipe at CIP |
| @ref | Compound | Percentage | |
|---|---|---|---|
| 19813 | Lysozyme | 1 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19813 | 22599 ChEBI | arabinose | +/- | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 19813 | 62968 ChEBI | cellulose | +/- | ||
| 121146 | 16947 ChEBI | citrate | - | carbon source | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 121146 | 4853 ChEBI | esculin | + | hydrolysis | |
| 19813 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 19813 | 17234 ChEBI | glucose | +/- | ||
| 121146 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 19813 | 29864 ChEBI | mannitol | + | ||
| 19813 | 17268 ChEBI | myo-inositol | + | ||
| 121146 | 17632 ChEBI | nitrate | + | reduction | |
| 121146 | 17632 ChEBI | nitrate | - | respiration | |
| 121146 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 19813 | 16634 ChEBI | raffinose | +/- | ||
| 19813 | 26546 ChEBI | rhamnose | +/- | ||
| 19813 | 17992 ChEBI | sucrose | +/- | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 19813 | 18222 ChEBI | xylose | +/- |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 121146 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 121146 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 121146 | amylase | + | ||
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 121146 | beta-galactosidase | - | 3.2.1.23 | |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 121146 | caseinase | - | 3.4.21.50 | |
| 121146 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 121146 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 121146 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 121146 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 121146 | lecithinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 121146 | lipase | + | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 121146 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 121146 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 121146 | oxidase | - | ||
| 121146 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 121146 | protease | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 121146 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 121146 | tween esterase | - | ||
| 121146 | urease | + | 3.5.1.5 | |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1465611v1 assembly for Streptomyces morookaense JCM 4793 | scaffold | 1970 | 69.55 | ||||
| 66792 | ASM1303094v1 assembly for Streptomyces morookaense DSM 40503 | contig | 1970 | 31.12 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces morookaense strain DSM 40503 16S ribosomal RNA gene, partial sequence | AY999842 | 1420 | 1970 | ||
| 20218 | Streptomyces morookaense gene for 16S ribosomal RNA, partial sequence, strain: JCM 4673 | D44300 | 120 | 1970 | ||
| 20218 | Streptomyces morookaense 16S rRNA gene, type strain LMG 20074T | AJ781349 | 1478 | 1970 | ||
| 20218 | Streptomyces morookaense gene for 16S rRNA, partial sequence, strain: NBRC 13416 | AB184878 | 1477 | 1970 | ||
| 124043 | Streptomyces morookaense strain JCM 4793 16S ribosomal RNA gene, partial sequence. | MT760615 | 1397 | 1970 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.57 | no |
| 125439 | motility | BacteriaNetⓘ | no | 93.22 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.27 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 85.88 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.23 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 92.84 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 88.74 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 90.42 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 88.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Estimates of RelSeq, Mesh1, and SAHMex Hydrolysis of (p)ppGpp and (p)ppApp by Thin Layer Chromatography and NADP/NADH Coupled Assays. | Potrykus K, Thomas NE, Bruhn-Olszewska B, Sobala M, Dylewski M, James T, Cashel M. | Front Microbiol | 10.3389/fmicb.2020.581271 | 2020 | ||
| Class V Lanthipeptide Cyclase Directs the Biosynthesis of a Stapled Peptide Natural Product. | Pei ZF, Zhu L, Sarksian R, van der Donk WA, Nair SK. | J Am Chem Soc | 10.1021/jacs.2c06808 | 2022 | ||
| Chemical constituents from the Streptomyces morookaensis strain Sm4-1986. | Wu GY, Zhu ZY, Zhang X, Wang MM, Li JX, Hu YJ, Tan HB. | Nat Prod Res | 10.1080/14786419.2021.1881095 | 2022 | ||
| Spatiotemporal biocontrol and rhizosphere microbiome analysis of Fusarium wilt of banana. | Zhu Z, Wu G, Deng R, Hu X, Tan H, Chen Y, Tian Z, Li J. | Commun Biol | 10.1038/s42003-023-04417-w | 2023 | ||
| Fusarium Tropical Race 4 in Latin America and the Caribbean: status and global research advances towards disease management. | Munhoz T, Vargas J, Teixeira L, Staver C, Dita M. | Front Plant Sci | 10.3389/fpls.2024.1397617 | 2024 | ||
| Structure-function comparisons of (p)ppApp vs (p)ppGpp for Escherichia coli RNA polymerase binding sites and for rrnB P1 promoter regulatory responses in vitro. | Bruhn-Olszewska B, Molodtsov V, Sobala M, Dylewski M, Murakami KS, Cashel M, Potrykus K. | Biochim Biophys Acta Gene Regul Mech | 10.1016/j.bbagrm.2018.07.005 | 2018 | ||
| Methylobacterium extorquens RSH Enzyme Synthesizes (p)ppGpp and pppApp in vitro and in vivo, and Leads to Discovery of pppApp Synthesis in Escherichia coli. | Sobala M, Bruhn-Olszewska B, Cashel M, Potrykus K. | Front Microbiol | 10.3389/fmicb.2019.00859 | 2019 | ||
| Metabolism | A widespread toxin-antitoxin system exploiting growth control via alarmone signaling. | Jimmy S, Saha CK, Kurata T, Stavropoulos C, Oliveira SRA, Koh A, Cepauskas A, Takada H, Rejman D, Tenson T, Strahl H, Garcia-Pino A, Hauryliuk V, Atkinson GC. | Proc Natl Acad Sci U S A | 10.1073/pnas.1916617117 | 2020 | |
| Enzymology | Streptomyces nucleotide 3'-pyrophosphokinase are insensitive to stringent control. | Mukai J, Muta S, Ozumi Y. | J Basic Microbiol | 10.1002/jobm.3620291008 | 1989 | |
| Enhanced activity of 3'-pyrophospho coenzyme A. | Mukai J. | Nucleic Acids Symp Ser | 1984 | |||
| Enzymology | Purine nucleotide pyrophosphotransferase from Streptomyces morookaensis, capable of synthesizing pppApp and pppGpp. | Oki T, Yoshimoto A, Sato S, Takamatsu A. | Biochim Biophys Acta | 10.1016/0005-2744(75)90228-4 | 1975 | |
| Metabolism | Occurrence of pppApp-synthesizing activity in actinomycetes and isolation of purine nucleotide pyrophosphotransferase. | Oki T, Yoshimoto A, Ogasawara T, Sato S, Takamatsu A. | Arch Microbiol | 10.1007/bf00446837 | 1976 | |
| Metabolism | Identification of the bacterial alarmone guanosine 5'-diphosphate 3'-diphosphate (ppGpp) in plants. | Takahashi K, Kasai K, Ochi K. | Proc Natl Acad Sci U S A | 10.1073/pnas.0308555101 | 2004 | |
| Metabolism | The two PPX-GppA homologues from Mycobacterium tuberculosis have distinct biochemical activities. | Choi MY, Wang Y, Wong LL, Lu BT, Chen WY, Huang JD, Tanner JA, Watt RM. | PLoS One | 10.1371/journal.pone.0042561 | 2012 | |
| Phylogeny | The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life. | Atkinson GC, Tenson T, Hauryliuk V. | PLoS One | 10.1371/journal.pone.0023479 | 2011 | |
| Genetics | Draft Genome Sequence of Streptomyces morookaense DSM 40503, an 8-Azaguanine-Producing Strain. | Hei Y, Li Z, Zhou Y, Hu C, Gao JM, Qi J | Microbiol Resour Announc | 10.1128/MRA.00518-20 | 2020 | |
| Enzymology | Molecular cloning and characterization of gene encoding novel puromycin-inactivating enzyme from blasticidin S-producing Streptomyces morookaensis. | Nishimura M, Ikeda K, Sugiyama M | J Biosci Bioeng | 10.1263/jbb.101.63 | 2006 | |
| Enzymology | Purification and characterization of a puromycin-hydrolyzing enzyme from blasticidin S-producing Streptomyces morookaensis. | Nishimura M, Matsuo H, Nakamura A, Sugiyama M | J Biochem | 10.1093/oxfordjournals.jbchem.a021929 | 1998 | |
| Phylogeny | Streptomyces lacticiproducens sp. nov., a lactic acid-producing streptomycete isolated from the rhizosphere of tomato plants. | Zhu HH, Yao Q, Yang SZ, Li ZK, Guo J | Int J Syst Evol Microbiol | 10.1099/ijs.0.019125-0 | 2010 |
| #9602 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40503 |
| #19813 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #33897 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #121146 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108145 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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