Strain identifier

BacDive ID: 16219

Type strain: Yes

Species: Streptomyces tuirus

Strain history: KCC S-0255 <-- V. Q. Gonçalves de Lima 4564 (IAUR 3121).

NCBI tax ID(s): 68278 (species)

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General

@ref: 9604

BacDive-ID: 16219

DSM-Number: 40505

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, antibiotic compound production

description: Streptomyces tuirus DSM 40505 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 68278
  • Matching level: species

strain history

@refhistory
9604<- E.B. Shirling, ISP (Streptoverticillium tuirum) <- ATCC <- IAUR 3121
67770KCC S-0255 <-- V. Q. Gonçalves de Lima 4564 (IAUR 3121).

doi: 10.13145/bacdive16219.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces tuirus
  • full scientific name: Streptomyces tuirus Albert and Malaquias de Querioz 1963 (Approved Lists 1980)

@ref: 9604

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces tuirus

full scientific name: Streptomyces tuirus Albert and Malaquias de Querioz 1963

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9604GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9604STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperature
9604positivegrowth28
18602positiveoptimum28
67770positivegrowth28

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes92.368
69481yes100

compound production

@refcompound
9604tuoromycin
20216Tuoromycin
67770Tuoromicin

halophily

  • @ref: 18602
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18602+++-+-+--++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9604soil
67770SoilPiracicaba, São PauloBrazilBRAMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3171.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_3171&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AF503493
  • Sequence Identity:
  • Total samples: 28
  • soil counts: 12
  • animal counts: 16

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
96041Risk group (German classification)
186021German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces tuirus 16S ribosomal RNA, partial sequenceAF5034931455nuccore68278
20218Streptomyces tuirus strain DSM 40505 16S ribosomal RNA gene, partial sequenceGU383129780nuccore68278
20218Streptomyces tuirus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4846D44403121nuccore68278
20218Streptomyces tuirus gene for 16S rRNA, partial sequence, strain: NBRC 15617AB1846901460nuccore68278
20218Streptomyces violaceoruber strain NRRL B-3631 16S ribosomal RNA gene, partial sequenceAY9997331438nuccore1935

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces tuirus JCM 4255GCA_014701095completencbi68278
66792Streptomyces tuirus strain JCM 425568278.4wgspatric68278

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes86.38no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.058no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.379no
69480spore-formingspore-formingAbility to form endo- or exosporesyes92.368no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno92.978yes
69480flagellatedmotile2+Ability to perform flagellated movementno87.5no

External links

@ref: 9604

culture collection no.: DSM 40505, ATCC 19007, CBS 719.72, IFO 13418, ISP 5505, JCM 4846, NBRC 13418, RIA 1379, JCM 4255, BCRC 12217, CGMCC 4.1758, IFO 15617, NBRC 15617, NRRL B-3631

straininfo link

  • @ref: 85280
  • straininfo: 36806

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9604Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40505)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40505
18602Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40505.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85280Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36806.1StrainInfo: A central database for resolving microbial strain identifiers