Streptomyces orinoci (DSM 40571, ATCC 23202, CBS 767.72)

Name: Streptomyces orinoci (DSM 40571, ATCC 23202, CBS 767.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16172

Type strain

Strain Designation 1882, FI 1882

Culture col. no. DSM 40571 ATCC 23202 CBS 767.72 IFO 13466 IPV 1901 16 more

NCBI tax ID(s) 67339

Special Collections DSMZ JCM KCTC CIP Wink compendium

History <- E.B. Shirling, ISP <- B. Camerino, Farmitalia, 1882 FI KCC S-0546 <-- IPV 1901 <-- Farmitalia FI 1882. CIP <- 2003, JCM <- 1983, KCC <- IFO <- SAJ <- ISP <- B. Camerino: strain FI 1882

Links

Streptomyces orinoci 1882 is an obligate aerobe, mesophilic, Gram-positive prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389361

ATCC 23202,IFO 13466,JCM 4546,JCM 4807,NRRL B-3379,VKM Ac-929,CBS 767.72,CECT 3267,KCTC 9870,NBRC 13466,BCRC 15173,CCRC 15173,CIP 108141,CGMCC 4.1989,DSM 40571

@ref 20215

Last LPSN update 2026-02-09 11:21:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces orinoci

Full scientific name Streptomyces orinoci (Cassinelli et al. 1967) Witt and Stackebrandt 1991

Synonyms (1)

Streptoverticillium orinoci

BacDive ID	Other strains from **Streptomyces orinoci** (1)	Type strain
105505	S. orinoci STI41337(IMET), JA10437, 42063, IMET 42063, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
121441	positive	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
19477	Broom yellow	10-14 days	ISP 2
19477	Yellow	10-14 days	ISP 3
19477	Yellow	10-14 days	ISP 4
19477	Curry	10-14 days	ISP 5
19477	Yellow	10-14 days	ISP 6
19477	Yellow	10-14 days	ISP 7
121441

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19477		ISP 2
19477		ISP 3
19477		ISP 4
19477		ISP 5
19477		ISP 6
19477		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9652	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19477	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19477	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19477	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19477	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19477	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19477	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
33204	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
9652	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
121441	CIP Medium 72	Medium recipe at CIP
121441	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9652	positive	growth	28	mesophilic
19477	positive	optimum	28	mesophilic
33204	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
121441	positive	growth	25-45
121441	negative	growth	10

Physiology and metabolism

Oxygen tolerance

121441

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.41

Compound production

@ref	Compound
9652	neoantimycin
9652	neoaureothin
9652	ochramycin
20216	Neoantimycin
20216	neoaureothin
20216	ochramycin
19477	Neoaureothin
19477	Neoanthimycin
67770	neoaureothricin
67770	ochramycin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19477	NaCl	positive	maximum	2.5 %
121441	NaCl	positive	growth	0-2 %
121441	NaCl		growth	4 %
121441	NaCl		growth	6 %
121441	NaCl		growth	8 %
121441	NaCl		growth	10 %

Tolerance

@ref	Compound	Percentage
19477	Lysozyme	1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
19477	22599 ChEBI	arabinose	+/-
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
19477	62968 ChEBI	cellulose	+/-
121441	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
121441	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
19477	28757 ChEBI	fructose	+/-
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
19477	17234 ChEBI	glucose	+/-
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
121441	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
19477	29864 ChEBI	mannitol	+/-
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
19477	17268 ChEBI	myo-inositol	+/-
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
121441	17632 ChEBI	nitrate	-	reduction
121441	17632 ChEBI	nitrate	-	respiration
121441	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
19477	16634 ChEBI	raffinose	+/-
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
19477	26546 ChEBI	rhamnose	+/-
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
19477	17992 ChEBI	sucrose	+/-
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
19477	18222 ChEBI	xylose	+/-

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121441	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
121441	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
67770		neoantimycin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
121441	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
121441	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121441	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121441	amylase	-
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
121441	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121441	caseinase	-	3.4.21.50
121441	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121441	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
121441	gamma-glutamyltransferase	+	2.3.2.2
121441	gelatinase	-
68368	gelatinase	-		from API 20E
121441	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121441	lipase	-
68382	lipase (C 14)	-		from API zym
121441	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
121441	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
121441	oxidase	-
121441	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
121441	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
121441	tween esterase	-
121441	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19477	-	+	+	+	+	+	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121441	-	+	-	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121441	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121441	not determinedn.d.	+	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Continent
9652	soil
67770	Soil	Orinoco River	South America
121441	Environment, Soil	Orinoco river	South America	Middle and South America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9652	1	Risk group (German classification) According to TRBA 466
19477	1	Risk group (German classification) According to TRBA 466
121441	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM312129v1 assembly for Streptomyces orinoci NRRL B-3379	contig	GCA_003121295	67339.4	2862619375	67339	68.92

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces orinoci gene for 16S rRNA, partial sequence	AB122735	564	67339
20218	Streptomyces orinoci gene for 16S ribosomal RNA, partial sequence, strain: JCM 4546	D44225	120	67339
20218	Streptomyces orinoci gene for 16S rRNA, partial sequence, strain: NBRC 13466	AB184866	1469	67339
20218	Streptomyces orinoci strain NRRL B-3379T 16S ribosomal RNA gene, partial sequence	DQ442536	1492	67339

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces orinoci NRRL B-3379
NCBI: GCA_003121295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.75	no
125438	anaerobic	anaerobicⓘ	no	92.54	yes
125438	aerobic	aerobicⓘ	yes	87.74	yes
125438	spore-forming	spore-formingⓘ	yes	90.41	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Cloning and heterologous expression of the spectinabilin biosynthetic gene cluster from Streptomyces spectabilis.	Choi YS, Johannes TW, Simurdiak M, Shao Z, Lu H, Zhao H.	Mol Biosyst	10.1039/b923177c	2010
Pathogenicity	Rare Streptomyces N-formyl amino-salicylamides inhibit oncogenic K-Ras.	Salim AA, Cho KJ, Tan L, Quezada M, Lacey E, Hancock JF, Capon RJ.	Org Lett	10.1021/ol502376e	2014
Metabolism	Non-colinear polyketide biosynthesis in the aureothin and neoaureothin pathways: an evolutionary perspective.	Traitcheva N, Jenke-Kodama H, He J, Dittmann E, Hertweck C.	Chembiochem	10.1002/cbic.200700309	2007
Metabolism	Isolation, Purification, and Characterization of Heparinase from Streptomyces variabilis MTCC 12266.	Singh V, Haque S, Kumari V, El-Enshasy HA, Mishra BN, Somvanshi P, Tripathi CKM.	Sci Rep	10.1038/s41598-019-42740-7	2019
	Refactoring the silent spectinabilin gene cluster using a plug-and-play scaffold.	Shao Z, Rao G, Li C, Abil Z, Luo Y, Zhao H.	ACS Synth Biol	10.1021/sb400058n	2013
Genetics	Neoantimycin F, a Streptomyces-Derived Natural Product Induces Mitochondria-Related Apoptotic Death in Human Non-Small Cell Lung Cancer Cells.	Liu L, Zhu H, Wu W, Shen Y, Lin X, Wu Y, Liu L, Tang J, Zhou Y, Sun F, Lin HW.	Front Pharmacol	10.3389/fphar.2019.01042	2019
Metabolism	Reprogramming of the antimycin NRPS-PKS assembly lines inspired by gene evolution.	Awakawa T, Fujioka T, Zhang L, Hoshino S, Hu Z, Hashimoto J, Kozone I, Ikeda H, Shin-Ya K, Liu W, Abe I.	Nat Commun	10.1038/s41467-018-05877-z	2018
Metabolism	Direct Capture Technologies for Genomics-Guided Discovery of Natural Products.	Chan AN, Santa Maria KC, Li B.	Curr Top Med Chem	10.2174/1568026616666151012111209	2016
Metabolism	Direct observation of TALE protein dynamics reveals a two-state search mechanism.	Cuculis L, Abil Z, Zhao H, Schroeder CM.	Nat Commun	10.1038/ncomms8277	2015
Metabolism	Nitroaromatic compounds, from synthesis to biodegradation.	Ju KS, Parales RE.	Microbiol Mol Biol Rev	10.1128/mmbr.00006-10	2010
	Manipulating natural product biosynthetic pathways via DNA assembler.	Shao Z, Zhao H.	Curr Protoc Chem Biol	10.1002/9780470559277.ch130191	2014
Genetics	Identification and Antifungal Mechanism of a Novel Actinobacterium Streptomyces huiliensis sp. nov. Against Fusarium oxysporum f. sp. cubense Tropical Race 4 of Banana.	Qi D, Zou L, Zhou D, Zhang M, Wei Y, Zhang L, Xie J, Wang W.	Front Microbiol	10.3389/fmicb.2021.722661	2021
Phylogeny	Taxonomic re-evaluation of whorl-forming Streptomyces (formerly Streptoverticillium) species by using phenotypes, DNA-DNA hybridization and sequences of gyrB, and proposal of Streptomyces luteireticuli (ex Katoh and Arai 1957) corrig., sp. nov., nom. rev.	Hatano K, Nishii T, Kasai H.	Int J Syst Evol Microbiol	10.1099/ijs.0.02238-0	2003
Phylogeny	Streptomyces palmae sp. nov., isolated from oil palm (Elaeis guineensis) rhizosphere soil.	Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001298	2016

References

#9652	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40571
#19477	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33204	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#121441	Collection of Institut Pasteur ; Curators of the CIP; CIP 108141
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces orinoci (DSM 40571, ATCC 23202, CBS 767.72)

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