Name: Streptomyces olivoverticillatus DSM 40250
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16171

Type strain:

Species: Streptomyces olivoverticillatus

Culture col. no.: DSM 40250, ATCC 25480, CBS 890.69, ETH 28537, IFO 13068, ISP 5250, JCM 4100, JCM 4501, NBRC 13068, NRRL B-1994, RIA 1260, RIA 551, OEU 383, BCRC 13610, CECT 3266, CGMCC 4.1980, IFO 15273, IFO 3842, IFO 3929, KCTC 9871, MTCC 333, NBRC 15273, NBRC 3842, NBRC 3929, NCIMB 9714, VKM Ac-890

Strain history: KCC S-0100 <-- R. Shinobu 383.

NCBI tax ID(s): 66427 (species)

SI-ID 389273

ATCC 25480, DSM 40250, NRRL B-1994, IFO 13068, JCM 4100, JCM 4501, CCRC 13610, IFO 15273, IFO 3842, IFO 3929, VKM Ac-890, NCIMB 9714, CBS 890.69, CECT 3266, KCTC 9871, NBRC 13068, NBRC 15273, NBRC 3842, NBRC 3929, BCRC 13610, NRRL ISP-5250, NCIB 97148, NCIMB 97148, CGMCC 4.1980

Other strains from Streptomyces olivoverticillatus

S. olivoverticillatus DSM 40237, ATCC 12631, CBS 652.72, ...

Section

Streptomyces olivoverticillatus DSM 40250 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces olivoverticillatus**
	Full Scientific Name (LPSN)	Streptomyces olivoverticillatus (Shinobu 1956) Witt and Stackebrandt 1991

	Synonym	"Streptomyces* olivoverticillatus"*
	Synonym	Streptoverticillium olivoverticillatum
	Synonym	Streptoverticillium viridoflavum
	Synonym	Streptomyces viridoflavum
	Synonym	Streptomyces viridiflavus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.971

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9405]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9405]

Culture medium growth

[Ref.: #9405]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9405]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9405]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9405]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9405]

Name of produced compound

trichomycin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		trichomycin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9405]	Sample type/isolated from	soil
[Ref.: #9405]	Country	Japan
[Ref.: #9405]	Country ISO 3 Code	JPN
[Ref.: #9405]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mt. Shirane, Yamanashi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9405]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces olivoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 15273	AB184636	1468	ENA	66427 tax ID	*
[Ref.: #20218]	Streptomyces olivoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 3929	AB184812	1449	ENA	66427 tax ID	*
[Ref.: #20218]	Streptomyces olivoverticillatus strain NRRL B-1994T 16S ribosomal RNA gene, partial sequence	DQ442534	1492	ENA	66427 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces olivoverticillatus CECT 3266	GCA_014203555	scaffold	GenBank	66427 tax ID	*
[Ref.: #66792]	Streptomyces olivoverticillatus strain CECT 3266	66427.3	wgs	PATRIC	66427 tax ID	*
[Ref.: #66792]	Streptomyces olivoverticillatus CECT 3266	2863271063	draft	JGI IMG/M	66427 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces olivoverticillatus CECT 3266 NCBI: GCA_014203555.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces olivoverticillatus CECT 3266 NCBI: GCA_014203555.1
[Ref.: #69480]	flagellated	no	97.887	no
[Ref.: #69480]	gram-positive	yes	90.943	no
[Ref.: #69480]	anaerobic	no	99.163	no
[Ref.: #69480]	aerobic	yes	93.731	no
[Ref.: #69480]	halophile	no	94.253	no
[Ref.: #69480]	spore-forming	yes	92.99	no
[Ref.: #69480]	glucose-util	yes	89.694	no
[Ref.: #69480]	thermophile	no	95.715	yes
[Ref.: #69480]	motile	no	92.819	no
[Ref.: #69480]	glucose-ferment	no	90.149	no

Availability in culture collections External links

[Ref.: #9405]

Culture collection no.

DSM 40250, ATCC 25480, CBS 890.69, ETH 28537, IFO 13068, ISP 5250, JCM 4100, JCM 4501, NBRC 13068, NRRL B-1994, RIA 1260, RIA 551, OEU 383, BCRC 13610, CECT 3266, CGMCC 4.1980, IFO 15273, IFO 3842, IFO 3929, KCTC 9871, MTCC 333, NBRC 15273, NBRC 3842, NBRC 3929, NCIMB 9714, VKM Ac-890

[Ref.: #85236]

SI-ID 389273

References

#9405

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40250

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85236

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389273.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces olivoverticillatus CECT 3266

Streptomyces olivoverticillatus CECT 3266

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