Strain identifier

BacDive ID: 16171

Type strain: Yes

Species: Streptomyces olivoverticillatus

Strain history: KCC S-0100 <-- R. Shinobu 383.

NCBI tax ID(s): 66427 (species)

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General

@ref: 9405

BacDive-ID: 16171

DSM-Number: 40250

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces olivoverticillatus DSM 40250 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 66427
  • Matching level: species

strain history

@refhistory
9405<- E.B. Shirling, ISP <- R. Shinobu, OEU, 383
67770KCC S-0100 <-- R. Shinobu 383.

doi: 10.13145/bacdive16171.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces olivoverticillatus
  • full scientific name: Streptomyces olivoverticillatus (Shinobu 1956) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptomyces olivoverticillatus
    20215Streptoverticillium olivoverticillatum
    20215Streptoverticillium viridoflavum
    20215Streptomyces viridoflavum
    20215Streptomyces viridiflavus

@ref: 9405

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces olivoverticillatus

full scientific name: Streptomyces olivoverticillatus (Shinobu 1956) Witt and Stackebrandt 1991

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.971
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9405
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9405positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9405
  • compound: trichomycin

metabolite production

  • @ref: 67770
  • Chebi-ID: 35022
  • metabolite: trichomycin
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9405soilJapanJPNAsia
67770SoilJapanJPNAsiaMt. Shirane, Yamanashi Pref.

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9405
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces olivoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 15273AB1846361468ena66427
20218Streptomyces olivoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 3929AB1848121449ena66427
20218Streptomyces olivoverticillatus strain NRRL B-1994T 16S ribosomal RNA gene, partial sequenceDQ4425341492ena66427

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces olivoverticillatus CECT 3266GCA_014203555scaffoldncbi66427
66792Streptomyces olivoverticillatus strain CECT 326666427.3wgspatric66427
66792Streptomyces olivoverticillatus CECT 32662863271063draftimg66427

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.887no
gram-positiveyes90.943no
anaerobicno99.163no
aerobicyes93.731no
halophileno94.253no
spore-formingyes92.99no
glucose-utilyes89.694no
thermophileno95.715yes
motileno92.819no
glucose-fermentno90.149no

External links

@ref: 9405

culture collection no.: DSM 40250, ATCC 25480, CBS 890.69, ETH 28537, IFO 13068, ISP 5250, JCM 4100, JCM 4501, NBRC 13068, NRRL B-1994, RIA 1260, RIA 551, OEU 383, BCRC 13610, CECT 3266, CGMCC 4.1980, IFO 15273, IFO 3842, IFO 3929, KCTC 9871, MTCC 333, NBRC 15273, NBRC 3842, NBRC 3929, NCIMB 9714, VKM Ac-890

straininfo link

  • @ref: 85236
  • straininfo: 389273

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9405Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40250)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40250
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85236Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389273.1StrainInfo: A central database for resolving microbial strain identifiers