Streptomyces netropsis (DSM 41480, DSM 41502, VKM Ac-1230)

Name: Streptomyces netropsis (DSM 41480, DSM 41502, VKM Ac-1230)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16169

Type strain

Culture col. no. DSM 41480 DSM 41502 VKM Ac-1230 LIA 0725 JCM 9948 4 more

NCBI tax ID(s) 76729

Special Collections DSMZ JCM

History <- N. S. Agre, LIA, 0725 VKM Ac-1230 <-- Yu. E. Konev LIA 0725.

Links

Streptomyces netropsis DSM 41480 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from Mountain soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 50009

DSM 41480,DSM 41502,VKM Ac-1230,JCM 9948,IFO 15900,NBRC 15900,LMG 20320,NRRL B-24286,CGMCC 4.1798

@ref 20215

Last LPSN update 2026-02-09 11:21:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces netropsis

Full scientific name Streptomyces netropsis (Finlay et al. 1951) Witt and Stackebrandt 1991

Synonyms (13)

Streptoverticillium distallicum
Streptoverticillium netropsis
Streptomyces distallicus
"Streptomyces flavopersicus"
Streptoverticillium syringium
Streptomyces kentuckensis
Streptomyces syringium
Streptomyces syringius
"Streptomyces netropsis"
"Streptomyces kentuckensis"
Streptoverticillium flavopersicum
Streptoverticillium kentuckense
Streptomyces flavopersicus

BacDive ID	Other strains from **Streptomyces netropsis** (9)	Type strain
16167	S. netropsis 4779, DSM 40259, ATCC 23940, CBS 924.68, ... (type strain)
15346	S. netropsis MA-52, DSM 40558, ATCC 27425, CBS 755.72, ...
16165	S. netropsis 5XI RCV, DSM 40052, ATCC 12691, ATCC 23926, ...
16166	S. netropsis M-141, DSM 40093, ATCC 19756, CBS 494.68, ...
16168	S. netropsis FI 1096/13, DSM 40846, IFO 15815, JCM 4544, ...
126520	S. netropsis ST002900(HKI),
127846	S. netropsis ST027641(HKI),
128252	S. netropsis ST028298(HKI), GT20046032, m35,
128253	S. netropsis SF003737(FSU),

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.8

Multimedia

@ref:	10344
multimedia content:	DSM_41480.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41480.jpg
caption:	Medium 65 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10344	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10344	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
10344	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10344	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.4

Spore formation

@ref	Spore formation	Confidence
125438		92.847

Compound production

67770

CompoundHexaene antibiotics

Isolation, sampling and environmental information

Isolation

67770

Sample typeMountain soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10344	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787662v1 assembly for Streptomyces syringium DSM 41480	contig	GCA_017876625	76729.3	2918380080	76729	78.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Streptomyces netropsis gene for 16S rRNA, partial sequence, strain: NBRC 15900	AB249923	1449		55404
67770	Streptomyces syringium 16S rRNA gene, type strain LMG 20320	AJ781375	1476		76729

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces syringium DSM 41480
NCBI: GCA_017876625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.30	no
125439	motility	BacteriaNetⓘ	no	82.50	no
125439	gram_stain	BacteriaNetⓘ	positive	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces syringium strain DSM 41480
PATRIC: 76729.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.75	no
125438	anaerobic	anaerobicⓘ	no	97.30	no
125438	aerobic	aerobicⓘ	yes	89.40	no
125438	spore-forming	spore-formingⓘ	yes	92.85	no
125438	thermophilic	thermophileⓘ	no	92.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

References

#10344	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41480
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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