Strain identifier
BacDive ID: 16169
Type strain: 
Species: Streptomyces netropsis
Strain history: VKM Ac-1230 <-- Yu. E. Konev LIA 0725.
NCBI tax ID(s): 76729 (species)
version 9.3 (current version)
General
@ref: 10344
BacDive-ID: 16169
DSM-Number: 41480
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production
description: Streptomyces netropsis DSM 41480 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from Mountain soil.
NCBI tax id
- NCBI tax id: 76729
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10344 | <- N. S. Agre, LIA, 0725 |
| 67770 | VKM Ac-1230 <-- Yu. E. Konev LIA 0725. |
doi: 10.13145/bacdive16169.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces netropsis
- full scientific name: Streptomyces netropsis (Finlay et al. 1951) Witt and Stackebrandt 1991
synonyms
@ref synonym 20215 Streptomyces flavopersicus 20215 Streptomyces kentuckensis 20215 Streptoverticillium syringium 20215 Streptomyces syringium 20215 Streptomyces colombiensis 20215 Streptomyces distallicus 20215 Streptoverticillium flavopersicum 20215 Streptoverticillium kentuckense 20215 Streptoverticillium distallicum 20215 Streptomyces netropsis 20215 Streptoverticillium netropsis 20215 Streptomyces syringius
@ref: 10344
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces netropsis
full scientific name: Streptomyces netropsis (Finlay et al. 1951) Witt and Stackebrandt 1991
type strain: no
Morphology
cell morphology
- @ref: 125439
- gram stain: positive
- confidence: 98.8
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10344 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10344 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf | |
| 10344 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 10344 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 94.4
spore formation
- @ref: 125438
- spore formation: yes
- confidence: 92.847
compound production
- @ref: 67770
- compound: Hexaene antibiotics
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mountain soil
Safety information
risk assessment
- @ref: 10344
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Streptomyces netropsis gene for 16S rRNA, partial sequence, strain: NBRC 15900 | AB249923 | 1449 | nuccore | 55404 |
| 67770 | Streptomyces syringium 16S rRNA gene, type strain LMG 20320 | AJ781375 | 1476 | nuccore | 76729 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces syringium DSM 41480 | GCA_017876625 | contig | ncbi | 76729 |
| 66792 | Streptomyces syringium strain DSM 41480 | 76729.3 | wgs | patric | 76729 |
| 66792 | Streptoverticillium syringium DSM 41480 | 2918380080 | draft | img | 76729 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.745 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.295 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.402 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.847 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 77.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 82.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 94.4 |
External links
@ref: 10344
culture collection no.: DSM 41480, DSM 41502, VKM Ac-1230, LIA 0725, JCM 9948, CGMCC 4.1798, IFO 15900, NBRC 15900, NRRL B-24286
straininfo link
- @ref: 85234
- straininfo: 50009
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 10344 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41480) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41480 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 85234 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50009.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |