Streptomyces netropsis (DSM 40052, 5XI RCV, ATCC 12691)

Name: Streptomyces netropsis (DSM 40052, 5XI RCV, ATCC 12691)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16165

Type strain

Strain Designation 5XI RCV

Culture col. no. DSM 40052 5XI RCV ATCC 12691 ATCC 23926 CBS 910.68 23 more

NCBI tax ID(s) 55404

Special Collections DSMZ JCM JMRC

History DSMZ <- E.B. Shirling, ISP (Streptoverticillium kentuckense) <- ATCC JCM <-- KCC S-0153 <-- R. Shinobu P-3 <-- NRRL B-1831 <-- S. E. Masengill Co. (F. S. Barr 5X1 RCV).

Links

Streptomyces netropsis 5XI RCV is a bacterium that produces antibiotic compounds and was isolated from Soil, blue-grass field.

antibiotic compound production 16S sequence Bacteria

Name and taxonomic classification

SI-ID 5015

LMG 5977,ATCC 12691,ATCC 23926,DSM 40052,IFO 12880,IMET 43083,JCM 4153,JCM 4647,NCIB 9624,NRRL B-1831,CCRC 12429,NCIMB 9624,VKM Ac-877,CBS 910.68,CECT 3262,NBRC 12880,BCRC 12429,HAMBI 52

@ref 20215

Last LPSN update 2026-05-29 08:28:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces netropsis

Full scientific name Streptomyces netropsis (Finlay et al. 1951) Witt and Stackebrandt 1991

Synonyms (12)

Streptoverticillium netropsis
Streptoverticillium syringium
"Streptomyces flavopersicus"
Streptomyces kentuckensis
Streptoverticillium distallicum
Streptomyces distallicus
Streptomyces syringius
Streptomyces syringium
"Streptomyces netropsis"
Streptoverticillium flavopersicum
Streptoverticillium kentuckense
"Verticillomyces kentuckensis"

BacDive ID	Other strains from **Streptomyces netropsis** (19)	Type strain
16167	S. netropsis 4779, DSM 40259, ATCC 23940, CBS 924.68, ... (type strain)
15346	S. netropsis MA-52, DSM 40558, ATCC 27425, CBS 755.72, ...
16166	S. netropsis M-141, DSM 40093, ATCC 19756, CBS 494.68, ...
16168	S. netropsis FI 1096/13, DSM 40846, IFO 15815, JCM 4544, ...
16169	S. netropsis DSM 41480, DSM 41502, VKM Ac-1230, LIA 0725, ...
127187	S. netropsis ST004364,
127188	S. netropsis ST032185(HKI), Gause8211/54,
127189	S. netropsis ST032193, INA 14078
127190	S. netropsis ST026075(HKI), 55, JA02814B/NPS/B/3/304S5rek.T3/2,
127191	S. netropsis ST005059,
127192	S. netropsis ST004018(HKI), 1052,
127193	S. netropsis ST005074,
127194	S. netropsis ST004794,
127195	S. netropsis ST004938,
127196	S. netropsis ST008515(HKI), 45, AM33352/S130,
127197	S. netropsis ST008523(HKI), JA02814B/NPS/B/3/304S1, 54,
127198	S. netropsis ST004939,
127199	S. netropsis ST004174(HKI), JA03090A,
128253	S. netropsis SF003737,

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9236	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9236	positive	growth	37
67770	positive	growth	28

Physiology and metabolism

Compound production

@ref	Compound
9236	raisnomycine
20216	Raisnomycin
67770	Raisnomycin

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	myo-inositol biosynthesis	100	10 of 10
66794	glycogen metabolism	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	valine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	cardiolipin biosynthesis	100	7 of 7
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	butanoate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	starch degradation	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	d-mannose degradation	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	flavin biosynthesis	86.67	13 of 15
66794	alanine metabolism	86.21	25 of 29
66794	aclacinomycin biosynthesis	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	purine metabolism	82.98	78 of 94
66794	proline metabolism	81.82	9 of 11
66794	metabolism of disaccharids	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glutathione metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	lipid metabolism	77.42	24 of 31
66794	urea cycle	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	tryptophan metabolism	76.32	29 of 38
66794	histidine metabolism	75.86	22 of 29
66794	ketogluconate metabolism	75	6 of 8
66794	cyclohexanol degradation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	non-pathway related	73.68	28 of 38
66794	methionine metabolism	73.08	19 of 26
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	oxidative phosphorylation	69.23	63 of 91
66794	vitamin B1 metabolism	69.23	9 of 13
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	cysteine metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	tyrosine metabolism	64.29	9 of 14
66794	cholesterol biosynthesis	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	coenzyme M biosynthesis	60	6 of 10
66794	vitamin K metabolism	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	vitamin B6 metabolism	54.55	6 of 11
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	grixazone biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	phenol degradation	45	9 of 20
66794	lipid A biosynthesis	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	carotenoid biosynthesis	40.91	9 of 22
66794	3-chlorocatechol degradation	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	chlorophyll metabolism	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	mevalonate metabolism	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil, blue-grass field	KY	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9236	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces netropsis gene for 16S rRNA, partial sequence, strain: NBRC 12880	AB184215	1475	55404
20218	Streptomyces netropsis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4153	D44019	120	55404
20218	Streptomyces netropsis strain NRRL B-1831T 16S ribosomal RNA gene, partial sequence	DQ442512	1505	55404

GC content

@ref	GC-content (mol%)	Method
67770	76.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Pilot market surveillance of GMM contaminations in alpha-amylase food enzyme products: A detection strategy strengthened by a newly developed qPCR method targeting a GM Bacillus licheniformis producing alpha-amylase.	Fraiture MA, Gobbo A, Guillitte C, Marchesi U, Verginelli D, De Greve J, D'aes J, Vanneste K, Papazova N, Roosens NHC.	Food Chem (Oxf)	10.1016/j.fochms.2023.100186	2024
Biotechnology	Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing.	Fraiture MA, Bogaerts B, Winand R, Deckers M, Papazova N, Vanneste K, De Keersmaecker SCJ, Roosens NHC.	Sci Rep	10.1038/s41598-020-63987-5	2020
Enzymology	Overproduction of soluble recombinant transglutaminase from Streptomyces netropsis in Escherichia coli.	Yu YJ, Wu SC, Chan HH, Chen YC, Chen ZY, Yang MT	Appl Microbiol Biotechnol	10.1007/s00253-008-1688-7	2008

References

#9236	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40052
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces netropsis (DSM 40052, 5XI RCV, ATCC 12691)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Compound production

Pathway annotation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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