Strain identifier

BacDive ID: 16165

Type strain: No

Species: Streptomyces netropsis

Strain Designation: 5XI RCV

Strain history: KCC S-0153 <-- R. Shinobu P-3 <-- NRRL B-1831 <-- S. E. Masengill Co. (F. S. Barr 5X1 RCV).

NCBI tax ID(s): 55404 (species)

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General

@ref: 9236

BacDive-ID: 16165

DSM-Number: 40052

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces netropsis 5XI RCV is a mesophilic bacterium that produces antibiotic compounds and was isolated from Soil, blue-grass field.

NCBI tax id

  • NCBI tax id: 55404
  • Matching level: species

strain history

@refhistory
9236<- E.B. Shirling, ISP (Streptoverticillium kentuckense) <- ATCC
67770KCC S-0153 <-- R. Shinobu P-3 <-- NRRL B-1831 <-- S. E. Masengill Co. (F. S. Barr 5X1 RCV).

doi: 10.13145/bacdive16165.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces netropsis
  • full scientific name: Streptomyces netropsis (Finlay et al. 1951) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptoverticillium distallicum
    20215Streptomyces flavopersicus
    20215Streptomyces netropsis
    20215Streptomyces kentuckensis
    20215Streptoverticillium netropsis
    20215Streptomyces syringius
    20215Streptoverticillium flavopersicum
    20215Streptoverticillium syringium
    20215Streptoverticillium kentuckense
    20215Streptomyces syringium
    20215Streptomyces colombiensis
    20215Streptomyces distallicus

@ref: 9236

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces netropsis

full scientific name: Streptomyces netropsis (Finlay et al. 1951) Witt and Stackebrandt 1991

strain designation: 5XI RCV

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9236
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9236positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9236raisnomycine
20216Raisnomycin
67770Raisnomycin

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil, blue-grass field
  • geographic location: KY
  • country: USA
  • origin.country: USA
  • continent: North America

Safety information

risk assessment

  • @ref: 9236
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces netropsis gene for 16S rRNA, partial sequence, strain: NBRC 12880AB1842151475ena55404
20218Streptomyces netropsis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4153D44019120ena55404
20218Streptomyces netropsis strain NRRL B-1831T 16S ribosomal RNA gene, partial sequenceDQ4425121505ena55404

GC content

  • @ref: 67770
  • GC-content: 76.8
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 9236

culture collection no.: DSM 40052, ATCC 12691, ATCC 23926, CBS 910.68, ETH 24427, IFO 12880, IPV 1780, IPV 1958, IPV 940, ISP 5052, JCM 4153, JCM 4647, KCC S-0153, KCC S-0647, NBRC 12880, NRRL B-1831, RIA 1114, BCRC 12429, CECT 3262, HAMBI 52, IFM 1184, IMET 43083, LMG 5977, NCB 749, NCIMB 9624, VKM Ac-877

straininfo link

  • @ref: 85230
  • straininfo: 5015

literature

  • topic: Enzymology
  • Pubmed-ID: 18810430
  • title: Overproduction of soluble recombinant transglutaminase from Streptomyces netropsis in Escherichia coli.
  • authors: Yu YJ, Wu SC, Chan HH, Chen YC, Chen ZY, Yang MT
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s00253-008-1688-7
  • year: 2008
  • mesh: Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/isolation & purification/*metabolism, Base Sequence, Cloning, Molecular, Enzyme Stability, Escherichia coli/*genetics/metabolism, *Gene Expression, Molecular Sequence Data, Molecular Weight, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Streptomyces/*enzymology, Transglutaminases/chemistry/genetics/isolation & purification/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9236Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40052)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40052
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85230Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5015.1StrainInfo: A central database for resolving microbial strain identifiers