Name: Ligilactobacillus agilis JCM 1048
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160961

Type strain:

Species: Ligilactobacillus agilis

Culture col. no.: JCM 1048, ATCC 43564

Strain history: T. Mitsuoka ChN-4-2-6.

NCBI tax ID(s): 1601 (species)

SI-ID 41918

ATCC 43564, JCM 1048, BCRC 14036, CCRC 14036

Special Collections

Other strains from Ligilactobacillus agilis

Section

Ligilactobacillus agilis JCM 1048 is a bacterium that was isolated from Chicken intestine.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Ligilactobacillus*
	Species	**Ligilactobacillus agilis**
	Full Scientific Name (LPSN)	Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020

Synonym

Lactobacillus agilis

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Chicken intestine
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC260015 (>99% sequence identity) for Ligilactobacillus agilis subclade from Microbeatlas

Aquatic Samples	1961
Soil Samples	1642
Animal Samples	36795
Plant Samples	892
Total Samples	41290

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus agilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1048	LC260015	1504	GenBank ENA	1601 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 1048, ATCC 43564

[Ref.: #113125]

SI-ID 41918

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Selected microbial groups and short-chain fatty acids profile in a simulated chicken cecum supplemented with two strains of Lactobacillus.	Meimandipour A, Shuhaimi M, Soleimani AF, Azhar K, Hair-Bejo M, Kabeir BM, Javanmard A, Muhammad Anas O, Yazid AM	Poult Sci	10.3382/ps.2009-00495	2010	*
Metabolism	In vitro fermentation of broiler cecal content: the role of lactobacilli and pH value on the composition of microbiota and end products fermentation.	Meimandipour A, Shuhaimi M, Hair-Bejo M, Azhar K, Kabeir BM, Rasti B, Yazid AM	Lett Appl Microbiol	10.1111/j.1472-765X.2009.02674.x	2009	*
Phylogeny	Effects of two probiotic Lactobacillus strains on jejunal and cecal microbiota of broiler chicken under acute heat stress condition as revealed by molecular analysis of 16S rRNA genes.	Lan PT, Sakamoto M, Benno Y	Microbiol Immunol	10.1111/j.1348-0421.2004.tb03620.x	2004	*
Phylogeny	Impact of two probiotic Lactobacillus strains feeding on fecal lactobacilli and weight gains in chicken.	Lan PT, Binh le T, Benno Y	J Gen Appl Microbiol	10.2323/jgam.49.29	2003	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113125

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41918.1 )

* These data were automatically processed and therefore are not curated

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