Strain identifier
BacDive ID: 160961
Type strain: 
Species: Ligilactobacillus agilis
Strain history: T. Mitsuoka ChN-4-2-6.
NCBI tax ID(s): 1601 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160961
keywords: 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus agilis JCM 1048 is a mesophilic bacterium that was isolated from Chicken intestine.
NCBI tax id
- NCBI tax id: 1601
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka ChN-4-2-6.
doi: 10.13145/bacdive160961.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus agilis
- full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus agilis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus agilis
full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chicken intestine
taxonmaps
- @ref: 69479
- File name: preview.99_6918.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3250;97_3988;98_5089;99_6918&stattab=map
- Last taxonomy: Ligilactobacillus agilis subclade
- 16S sequence: LC260015
- Sequence Identity:
- Total samples: 41290
- soil counts: 1642
- aquatic counts: 1961
- animal counts: 36795
- plant counts: 892
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus agilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1048
- accession: LC260015
- length: 1504
- database: ena
- NCBI tax ID: 1601
External links
@ref: 67770
culture collection no.: JCM 1048, ATCC 43564
straininfo link
- @ref: 113125
- straininfo: 41918
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12682864 | Impact of two probiotic Lactobacillus strains feeding on fecal lactobacilli and weight gains in chicken. | Lan PT, Binh le T, Benno Y | J Gen Appl Microbiol | 10.2323/jgam.49.29 | 2003 | Animal Feed, Animals, Chickens/*growth & development/microbiology, Enterobacteriaceae/isolation & purification, Feces/cytology/microbiology, Intestinal Mucosa/metabolism, Intestines/microbiology, Lactic Acid/metabolism, *Lactobacillus/classification/isolation & purification/physiology, Lactobacillus acidophilus/growth & development/isolation & purification, Phenotype, *Probiotics, Weight Gain | Enzymology |
| Phylogeny | 15611608 | Effects of two probiotic Lactobacillus strains on jejunal and cecal microbiota of broiler chicken under acute heat stress condition as revealed by molecular analysis of 16S rRNA genes. | Lan PT, Sakamoto M, Benno Y | Microbiol Immunol | 10.1111/j.1348-0421.2004.tb03620.x | 2004 | Age Factors, Animals, Cecum/*microbiology, Chickens/*microbiology, Cluster Analysis, Colony Count, Microbial/veterinary, DNA, Bacterial/chemistry/genetics, Heat Stress Disorders/*microbiology, Jejunum/*microbiology, Lactobacillus/genetics/*physiology, Polymerase Chain Reaction/veterinary, Polymorphism, Restriction Fragment Length, Probiotics/*pharmacology, RNA, Ribosomal, 16S/*analysis/chemistry/genetics, Random Allocation, Statistics, Nonparametric | Stress |
| Metabolism | 19725887 | In vitro fermentation of broiler cecal content: the role of lactobacilli and pH value on the composition of microbiota and end products fermentation. | Meimandipour A, Shuhaimi M, Hair-Bejo M, Azhar K, Kabeir BM, Rasti B, Yazid AM | Lett Appl Microbiol | 10.1111/j.1472-765X.2009.02674.x | 2009 | Animals, Cecum/chemistry/*metabolism/*microbiology, Chickens, Fatty Acids/chemistry/metabolism, *Fermentation, Hydrogen-Ion Concentration, Lactic Acid/metabolism, Lactobacillus/chemistry/*metabolism, Models, Biological | |
| Metabolism | 20181862 | Selected microbial groups and short-chain fatty acids profile in a simulated chicken cecum supplemented with two strains of Lactobacillus. | Meimandipour A, Shuhaimi M, Soleimani AF, Azhar K, Hair-Bejo M, Kabeir BM, Javanmard A, Muhammad Anas O, Yazid AM | Poult Sci | 10.3382/ps.2009-00495 | 2010 | Animals, Cecum/*microbiology, *Chickens, Colony Count, Microbial, Fatty Acids, Volatile/*metabolism, Lactates/chemistry/metabolism, Lactobacillus/*classification, Probiotics/*therapeutic use | Phylogeny |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113125 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID41918.1 |