Phocaeicola coprocola M16 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human feces.
Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacteroidota |
| Class Bacteroidia |
| Order Bacteroidales |
| Family Bacteroidaceae |
| Genus Phocaeicola |
| Species Phocaeicola coprocola |
| Full scientific name Phocaeicola coprocola (Kitahara et al. 2005) García-López et al. 2020 |
| Synonyms (1) |
| BacDive ID | Other strains from Phocaeicola coprocola (2) | Type strain |
|---|---|---|
| 161295 | P. coprocola JCM 12980 | |
| 161296 | P. coprocola JCM 12981 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6783 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | Medium recipe at MediaDive | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water | ||
| 6783 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 31548 | 17057 ChEBI | cellobiose | + | carbon source | |
| 68367 | 17057 ChEBI | cellobiose | + | builds acid from | from API 20A |
| 68367 | 17634 ChEBI | D-glucose | + | builds acid from | from API 20A |
| 68367 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 20A |
| 68367 | 16024 ChEBI | D-mannose | + | builds acid from | from API 20A |
| 68367 | 65327 ChEBI | D-xylose | + | builds acid from | from API 20A |
| 31548 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68367 | 4853 ChEBI | esculin | + | hydrolysis | from API 20A |
| 68367 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20A |
| 31548 | 17234 ChEBI | glucose | + | carbon source | |
| 68367 | 17754 ChEBI | glycerol | - | builds acid from | from API 20A |
| 68367 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 20A |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 31548 | 17716 ChEBI | lactose | + | carbon source | |
| 68367 | 17716 ChEBI | lactose | + | builds acid from | from API 20A |
| 31548 | 17306 ChEBI | maltose | + | carbon source | |
| 68367 | 17306 ChEBI | maltose | + | builds acid from | from API 20A |
| 31548 | 37684 ChEBI | mannose | + | carbon source | |
| 68367 | 6731 ChEBI | melezitose | - | builds acid from | from API 20A |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68367 | 16634 ChEBI | raffinose | + | builds acid from | from API 20A |
| 31548 | 26546 ChEBI | rhamnose | + | carbon source | |
| 31548 | 17814 ChEBI | salicin | + | carbon source | |
| 68367 | 17814 ChEBI | salicin | + | builds acid from | from API 20A |
| 31548 | 30911 ChEBI | sorbitol | + | carbon source | |
| 68367 | 30911 ChEBI | sorbitol | - | builds acid from | from API 20A |
| 68367 | 17992 ChEBI | sucrose | + | builds acid from | from API 20A |
| 31548 | 27082 ChEBI | trehalose | + | carbon source | |
| 68367 | 27082 ChEBI | trehalose | - | builds acid from | from API 20A |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68367 | 27897 ChEBI | tryptophan | - | energy source | from API 20A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| 68367 | 16199 ChEBI | urea | - | hydrolysis | from API 20A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | + | 3.4.11.2 | from API rID32A |
| 31548 | alkaline phosphatase | + | 3.1.3.1 | |
| 68380 | alkaline phosphatase | + | 3.1.3.1 | from API rID32A |
| 68380 | alpha-fucosidase | + | 3.2.1.51 | from API rID32A |
| 31548 | alpha-galactosidase | + | 3.2.1.22 | |
| 68380 | alpha-galactosidase | + | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | + | 3.2.1.20 | from API rID32A |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | + | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | + | 3.2.1.21 | from API rID32A |
| 68367 | beta-glucosidase | + | 3.2.1.21 | from API 20A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 6783 | catalase | - | 1.11.1.6 | |
| 68367 | catalase | - | 1.11.1.6 | from API 20A |
| 6783 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68367 | gelatinase | - | from API 20A | |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API rID32A |
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68367 | urease | - | 3.5.1.5 | from API 20A |
| @ref | IND | URE | GLU | MAN | LAC | SAC | MAL | SAL | XYL | ARA | GEL | ESC | GLY | CEL | MNE | MLZ | RAF | SOR | RHA | TRE | CAT | Spores presentSPOR | GramGRAM | Morphology coccus="+" rod="-"COCC | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6783 | - | - | + | - | + | + | + | + | + | - | - | + | - | + | + | - | + | - | +/- | - | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 6783 | - | - | + | - | + | + | + | + | + | - | - | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6783 | - | - | + | + | - | + | + | +/- | - | + | + | + | - | + | - | - | + | - | - | + | - | - | - | - | + | - | - | + | - | |
| 6783 | - | - | + | + | - | + | + | - | - | + | - | - | - | + | - | - | + | - | - | + | - | - | - | - | + | - | - | +/- | - | |
| 6783 | - | - | + | + | - | + | + | - | - | + | + | + | - | + | - | - | + | - | - | + | - | - | - | - | + | - | - | +/- | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence AB200224 (>99% sequence identity) for Phocaeicola coprocola subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2073123v1 assembly for Phocaeicola coprocola DSM 17136 FDAARGOS_1577 | contig | 470145 | 65.3 | ||||
| 67770 | ASM15484v1 assembly for Phocaeicola coprocola DSM 17136 | scaffold | 470145 | 52.9 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 99.56 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.83 | no |
| 125439 | motility | BacteriaNetⓘ | no | 84.71 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.95 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.62 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 91.80 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 92.44 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.30 | no |
| 125438 | aerobic | aerobicⓘ | no | 93.61 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 88.00 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Probiotic potential of Phocaeicola coprocola in modulating learning and memory behaviors in the honeybee model. | Xu M, Zhang X, Luo X, Zhou G, Zhang N, Chi X, Ren R, Peng L, Sun G, Yang Y. | Front Microbiol | 10.3389/fmicb.2025.1479992 | 2025 | |
| Pathogenicity | Exploring the Interplay of Gut Microbiota and Systemic Inflammation in Pediatric Obstructive Sleep Apnea Syndrome and Its Impact on Blood Pressure Status: A Cross-Sectional Study. | Huang CG, Lin WN, Hsin LJ, Fang TJ, Li HY, Lee CC, Lee LA. | Int J Mol Sci | 10.3390/ijms252413344 | 2024 | |
| Changes in the intestinal microbiota of broiler chicken induced by dietary supplementation of the diatomite-bentonite mixture. | Wesierska E, Micek P, Adamski MG, Gondek K, Lis M, Trela M, Wojtysiak D, Kowal J, Wyrobisz-Papiewska A, Kunstman G, Mosiolek S, Smoron K. | BMC Vet Res | 10.1186/s12917-024-04439-4 | 2025 | ||
| Monochromatic Light Impacts the Growth Performance, Intestinal Morphology, Barrier Function, Antioxidant Status, and Microflora of Yangzhou Geese. | Luo G, Cheng Y, Xu Y, Liu J, Yang W, Liu J, Guo B, Zhu H. | Animals (Basel) | 10.3390/ani15121815 | 2025 | ||
| Fecal microbiota transplantation improves bile acid malabsorption in patients with inflammatory bowel disease: results of microbiota and metabolites from two cohort studies. | Lu G, Zhang S, Wang R, Wu X, Chen Y, Wen Q, Cui B, Zhang F, Li P. | BMC Med | 10.1186/s12916-025-04353-y | 2025 | ||
| Difficulties in developmental follow-up of preterm neonates in a randomised-controlled trial of Bifidobacterium breve M16-V - Experience from Western Australia. | Agrawal S, Pestell CF, Granich J, Rao S, Nathan E, Wray JA, Whitehouse AJO, Patole S. | Early Hum Dev | 10.1016/j.earlhumdev.2020.105165 | 2020 | ||
| Surface display of eugenol oxidase and dioxygenase complex as a sustainable biocatalyst for efficient bioconversion of lignin-derived 4-n-propylguaiacol to vanillin. | Tian Y, Yang Y, Ni M, Wo J. | Microb Cell Fact | 10.1186/s12934-025-02680-6 | 2025 | ||
| Lactiplantibacillus plantarum for the Preparation of Fermented Low-Bitter Enzymatic Skim Milk with Antioxidant Ability. | Jiang Y, Zhang L, Jin Y, Xu H, Liang Y, Xia Z, Zhang C, Guan C, Qu H, Wa Y, Wang W, Huang Y, Gu R, Chen D. | Foods | 10.3390/foods13233828 | 2024 | ||
| Phylogeny | Effect of Geography and Captivity on Scat Bacterial Communities in the Imperiled Channel Island Fox. | Adams NE, Becker MA, Edmands S. | Front Microbiol | 10.3389/fmicb.2021.748323 | 2021 | |
| Effect of Fecal Microbiota Transplantation on Non-Alcoholic Fatty Liver Disease: A Randomized Clinical Trial. | Xue L, Deng Z, Luo W, He X, Chen Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.759306 | 2022 | ||
| A multi-strain probiotic blend reshaped obesity-related gut dysbiosis and improved lipid metabolism in obese children. | Chen AC, Fang TJ, Ho HH, Chen JF, Kuo YW, Huang YY, Tsai SY, Wu SF, Lin HC, Yeh YT. | Front Nutr | 10.3389/fnut.2022.922993 | 2022 | ||
| Host-genotype-dependent cecal microbes are linked to breast muscle metabolites in Chinese chickens. | Feng Y, Liu D, Liu Y, Yang X, Zhang M, Wei F, Li D, Hu Y, Guo Y. | iScience | 10.1016/j.isci.2022.104469 | 2022 | ||
| Gut Microbiota Dysbiosis in Patients with Biopsy-Proven Nonalcoholic Fatty Liver Disease: A Cross-Sectional Study in Taiwan. | Tsai MC, Liu YY, Lin CC, Wang CC, Wu YJ, Yong CC, Chen KD, Chuah SK, Yao CC, Huang PY, Chen CH, Hu TH, Chen CL. | Nutrients | 10.3390/nu12030820 | 2020 | ||
| Microbial Community Profiling Distinguishes Left-Sided and Right-Sided Colon Cancer. | Zhong M, Xiong Y, Ye Z, Zhao J, Zhong L, Liu Y, Zhu Y, Tian L, Qiu X, Hong X. | Front Cell Infect Microbiol | 10.3389/fcimb.2020.498502 | 2020 | ||
| The biodiversity of Lactobacillus spp. from Iranian raw milk Motal cheese and antibacterial evaluation based on bacteriocin-encoding genes. | Azizi F, Habibi Najafi MB, Edalatian Dovom MR. | AMB Express | 10.1186/s13568-017-0474-2 | 2017 | ||
| Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients. | Ishaq HM, Mohammad IS, Shahzad M, Ma C, Raza MA, Wu X, Guo H, Shi P, Xu J. | Int J Biol Sci | 10.7150/ijbs.24151 | 2018 | ||
| Genetics | Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes. | Magnusdottir S, Ravcheev D, de Crecy-Lagard V, Thiele I. | Front Genet | 10.3389/fgene.2015.00148 | 2015 | |
| Genetics | Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. | Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M. | Front Microbiol | 10.3389/fmicb.2019.02083 | 2019 | |
| Metabolism | Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism. | Mendez-Salazar EO, Vazquez-Mellado J, Casimiro-Soriguer CS, Dopazo J, Cubuk C, Zamudio-Cuevas Y, Francisco-Balderas A, Martinez-Flores K, Fernandez-Torres J, Lozada-Perez C, Pineda C, Sanchez-Gonzalez A, Silveira LH, Burguete-Garcia AI, Orbe-Orihuela C, Lagunas-Martinez A, Vazquez-Gomez A, Lopez-Reyes A, Palacios-Gonzalez B, Martinez-Nava GA | Mol Med | 10.1186/s10020-021-00311-5 | 2021 | |
| Genetics | Noncontiguous finished genome sequence and description of Mediterranea massiliensis gen. nov., sp. nov., a new member of the Bacteroidaceae family isolated from human colon. | Ngom II, Mailhe M, Ricaboni D, Vitton V, Benezech A, Khelaifia S, Michelle C, Cadoret F, Armstrong N, Levasseur A, Raoult D, Million M. | New Microbes New Infect | 10.1016/j.nmni.2017.11.009 | 2018 | |
| Phylogeny | Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum. | Lan PTN, Sakamoto M, Sakata S, Benno Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.64517-0 | 2006 | |
| Phylogeny | Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces. | Kitahara M, Sakamoto M, Ike M, Sakata S, Benno Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.63788-0 | 2005 |
| #6783 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17136 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #27839 | IJSEM 2143 2005 ( DOI 10.1099/ijs.0.63788-0 , PubMed 16166722 ) |
| #31548 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27839 |
| #60272 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54635 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68367 | Automatically annotated from API 20A . |
| #68380 | Automatically annotated from API rID32A . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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