Bacteroides intestinalis (CCUG 53889, DSM 17393, JCM 13265)

Name: Bacteroides intestinalis (CCUG 53889, DSM 17393, JCM 13265)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1609

Type strain

Strain Designation 341

Culture col. no. CCUG 53889 DSM 17393 JCM 13265 341

NCBI tax ID(s) 471870 329854

Special Collections DSMZ CCUG JCM Literature strains

History DSMZ <- M. Kitahara <- M. Matsumoto JCM <-- M. Kitahara 341 <-- M. Matsumoto 341.

Links

Bacteroides intestinalis 341 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human faeces.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289856

DSM 17393,JCM 13265,CCUG 53889,VTT E-093114

@ref 20215

Last LPSN update 2026-05-29 08:25:18

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides intestinalis

Full scientific name Bacteroides intestinalis Bakir et al. 2006

BacDive ID	Other strains from **Bacteroides intestinalis** (3)	Type strain
157206	B. intestinalis CCUG 70557
158057	B. intestinalis APC919/174, DSM 108646
161335	B. intestinalis JCM 13266

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31621	negative	01-05 µm	0.8 µm	rod-shaped
125439	negative				97.621
125438	negative				90.885

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
6945	alpha/beta	1	1-2 days
60058			2 days

Pigmentation

31621

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6945	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6945	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Deionized water

Culture temp

@ref	Growth	Type	Temperature (°C)
6945	positive	growth	37
31621	positive	growth	37
31621	positive	optimum	37
60058	positive	growth	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
31621	positive	optimum	7
31621	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6945	anaerobe
31621	anaerobe
60058	anaerobe
125438	anaerobe	91.384
125439	facultative anaerobe	91.193

Spore formation

@ref	Spore formation	Confidence
31621
125439		98.31

Observation

31621

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31621	22599 ChEBI	arabinose	+	carbon source
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
31621	17057 ChEBI	cellobiose	+	carbon source
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	+	builds acid from	from API 20A
31621	4853 ChEBI	esculin	+	hydrolysis
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
31621	17234 ChEBI	glucose	+	carbon source
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	+	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68367	62345 ChEBI	L-rhamnose	+	builds acid from	from API 20A
31621	17716 ChEBI	lactose	+	carbon source
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
31621	17306 ChEBI	maltose	+	carbon source
31621	37684 ChEBI	mannose	+	carbon source
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
31621	16634 ChEBI	raffinose	+	carbon source
68367	16634 ChEBI	raffinose	+	builds acid from	from API 20A
31621	26546 ChEBI	rhamnose	+	carbon source
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
31621	17992 ChEBI	sucrose	+	carbon source
68367	17992 ChEBI	sucrose	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	-	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	+	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A
31621	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite
31621	35581 ChEBI	indole
68380	35581 ChEBI	indole	from API rID32A
68367	35581 ChEBI	indole	from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
31621	35581 ChEBI	indole	+
68380	35581 ChEBI	indole	+	from API rID32A
68367	35581 ChEBI	indole	+	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68367	gelatinase	-		from API 20A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
6945	+	-	+	-	+	+	+/-	-	+	+	-	+	-	+/-	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
6945	+	-	+	-	+	+	+	-	+	+	-	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
6945	-	-	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
6945	-	-	+	+	-	-	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
6945	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
6945	-	-	+	+	-	-	+	+	-	+	+/-	-	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
6945	human faeces	Homo sapiens	Japan	JPN	Asia
60058	Human feces,healthy 32-yr-old female Japanese	Homo sapiens	Japan	JPN	Asia
67770	Human feces	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AB214328 (>99% sequence identity) for Bacteroides intestinalis subclade from Microbeatlas

Aquatic Samples	1390
Soil Samples	511
Animal Samples	71273
Plant Samples	242
Total Samples	73416

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
6945	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM17217v1 assembly for Bacteroides intestinalis DSM 17393	contig	GCA_000172175	471870.8	642791621	471870	78.18

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6945	Bacteroides intestinalis gene for 16S rRNA, partial sequence, strain:JCM 13265	AB214328	1484		471870

GC content

@ref	GC-content (mol%)	Method
6945	44
6945	42.7	sequence analysis
67770	44	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM17217v1 assembly for Bacteroides intestinalis DSM 17393
BV-BRC: 471870.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.19	no
125439	gram_stain	BacteriaNetⓘ	negative	97.62	no
125439	motility	BacteriaNetⓘ	no	81.65	no
125439	spore_formation	BacteriaNetⓘ	no	98.31	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides intestinalis DSM 17393
PATRIC: 471870.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	90.89	yes
125438	anaerobic	anaerobicⓘ	yes	91.38	yes
125438	spore-forming	spore-formingⓘ	no	86.54	no
125438	aerobic	aerobicⓘ	no	92.00	yes
125438	thermophilic	thermophileⓘ	no	92.28	yes
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Synthetic beta-d-Glucuronides: Substrates for Exploring Glucuronide Degradation by Human Gut Bacteria.	Gorecka A, Schacht H, Fraser MK, Teriosina A, London JA, Barsukov IL, Powell AK, Cartmell A, Stachulski AV, Yates EA.	ACS Omega	10.1021/acsomega.4c09036	2025
	Crystal structure and catalytic mechanism of PL35 family glycosaminoglycan lyases with an ultrabroad substrate spectrum.	Wei L, Cao HY, Zou R, Du M, Zhang Q, Lu D, Xu X, Xu Y, Wang W, Chen XL, Zhang YZ, Li F.	Elife	10.7554/elife.102422	2025
Enzymology	Data on cloning, expression and biochemical characteristics of a chondroitin sulfate/dermatan sulfate 4-O-endosulfatase.	Wei L, Xu Y, Du M, Fan Y, Zou R, Xu X, Zhang Q, Zhang YZ, Wang W, Li F.	Data Brief	10.1016/j.dib.2023.109139	2023
	When simplicity triumphs: niche specialization of gut bacteria exists even for simple fiber structures.	Xu H, Pudlo NA, Cantu-Jungles TM, Tuncil YE, Nie X, Kaur A, Reuhs BL, Martens EC, Hamaker BR.	ISME Commun	10.1093/ismeco/ycae037	2024
	Analysis of chondroitin degradation by components of a Bacteroides caccae polysaccharide utilization locus.	Alvarez B, Canil OF, Low KE, Hettle AG, Abbott DW, Boraston AB.	J Biol Chem	10.1016/j.jbc.2025.110354	2025
	Degradation Products of Complex Arabinoxylans by Bacteroides intestinalis Enhance the Host Immune Response.	Yasuma T, Toda M, Abdel-Hamid AM, D'Alessandro-Gabazza C, Kobayashi T, Nishihama K, D'Alessandro VF, Pereira GV, Mackie RI, Gabazza EC, Cann I.	Microorganisms	10.3390/microorganisms9061126	2021
	Polysaccharide utilization loci from Bacteroidota encode CE15 enzymes with possible roles in cleaving pectin-lignin bonds.	Seveso A, Mazurkewich S, Banerjee S, Poulsen J-CN, Lo Leggio L, Larsbrink J.	Appl Environ Microbiol	10.1128/aem.01768-23	2024
	SEMQuant: Extending Sipros-Ensemble with Match-Between-Runs for Comprehensive Quantitative Metaproteomics.	Zhang B, Feng S, Parajuli M, Xiong Y, Pan C, Guo X.	Bioinform Res Appl	10.1007/978-981-97-5087-0_9	2024
	Antagonistic Activity of Potentially Probiotic Lactic Acid Bacteria against Honeybee (Apis mellifera L.) Pathogens.	Leska A, Nowak A, Szulc J, Motyl I, Czarnecka-Chrebelska KH.	Pathogens	10.3390/pathogens11111367	2022
Enzymology	Carbohydrate esterases involved in deacetylation of food components by the human gut microbiota.	La Rosa SL, Lindstad LJ, Westereng B.	Essays Biochem	10.1042/ebc20220161	2023
	Impact of the herbal medicine, Ephedra sinica stapf, on gut microbiota and body weight in a diet-induced obesity model.	Song EJ, Shin NR, Jeon S, Nam YD, Kim H.	Front Pharmacol	10.3389/fphar.2022.1042833	2022
	Environmental factors drive bacterial degradation of gastrointestinal mucus.	Arias SL, van Wijngaarden EW, Balint D, Jones J, Crawford CC, Shukla PJ, Silberstein M, Brito IL.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00741-7	2025
	Discovery of a class of glycosaminoglycan lyases with ultrabroad substrate spectrum and their substrate structure preferences.	Wei L, Zou R, Du M, Zhang Q, Lu D, Xu Y, Xu X, Wang W, Zhang YZ, Li F.	J Biol Chem	10.1016/j.jbc.2024.107466	2024
Phylogeny	Safe production of Aspergillus terreus xylanase from Ricinus communis: gene identification, molecular docking, characterization, production of xylooligosaccharides, and its biological activities.	Nour SA, El-Sayed GM, Taie HAA, Emam MTH, El-Sayed AF, Salim RG.	J Genet Eng Biotechnol	10.1186/s43141-022-00390-9	2022
Metabolism	Degradation of complex arabinoxylans by human colonic Bacteroidetes.	Pereira GV, Abdel-Hamid AM, Dutta S, D'Alessandro-Gabazza CN, Wefers D, Farris JA, Bajaj S, Wawrzak Z, Atomi H, Mackie RI, Gabazza EC, Shukla D, Koropatkin NM, Cann I.	Nat Commun	10.1038/s41467-020-20737-5	2021
Enzymology	Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes.	Zhang M, Chekan JR, Dodd D, Hong PY, Radlinski L, Revindran V, Nair SK, Mackie RI, Cann I.	Proc Natl Acad Sci U S A	10.1073/pnas.1406156111	2014
	Increased Antibody Response to Fucosylated Oligosaccharides and Fucose-Carrying Bacteroides Species in Crohn's Disease.	Kappler K, Lasanajak Y, Smith DF, Opitz L, Hennet T.	Front Microbiol	10.3389/fmicb.2020.01553	2020
	4-O-Methyl Modifications of Glucuronic Acids in Xylans Are Indispensable for Substrate Discrimination by GH67 alpha-Glucuronidase from Bacillus halodurans C-125.	Yagi H, Maehara T, Tanaka T, Takehara R, Teramoto K, Yaoi K, Kaneko S.	J Appl Glycosci (1999)	10.5458/jag.jag.jag-2017_016	2017
Pathogenicity	Gut microbiota controls the development of chronic pancreatitis: A critical role of short-chain fatty acids-producing Gram-positive bacteria.	Pan LL, Ren ZN, Yang J, Li BB, Huang YW, Song DX, Li X, Xu JJ, Bhatia M, Zou DW, Zhou CH, Sun J.	Acta Pharm Sin B	10.1016/j.apsb.2023.08.002	2023
	Technical versus biological variability in a synthetic human gut community.	van de Velde C, Joseph C, Simoens K, Raes J, Bernaerts K, Faust K.	Gut Microbes	10.1080/19490976.2022.2155019	2023
Metabolism	The Glycoside Hydrolase Family 8 Reducing-End Xylose-Releasing Exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 Is Active on Branched Xylooligosaccharides.	Valenzuela SV, Lopez S, Biely P, Sanz-Aparicio J, Pastor FI.	Appl Environ Microbiol	10.1128/aem.01329-16	2016
Metabolism	A New Group of Modular Xylanases in Glycoside Hydrolase Family 8 from Marine Bacteria.	Chen XL, Zhao F, Yue YS, Zhang XY, Zhang YZ, Li PY.	Appl Environ Microbiol	10.1128/aem.01785-18	2018
Pathogenicity	Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.	Ng KM, Aranda-Diaz A, Tropini C, Frankel MR, Van Treuren W, O'Loughlin CT, Merrill BD, Yu FB, Pruss KM, Oliveira RA, Higginbottom SK, Neff NF, Fischbach MA, Xavier KB, Sonnenburg JL, Huang KC.	Cell Host Microbe	10.1016/j.chom.2019.10.011	2019
Metabolism	Discovery of exolytic heparinases and their catalytic mechanism and potential application.	Zhang Q, Cao HY, Wei L, Lu D, Du M, Yuan M, Shi D, Chen X, Wang P, Chen XL, Chi L, Zhang YZ, Li F.	Nat Commun	10.1038/s41467-021-21441-8	2021
	Gut microbiota regulate Alzheimer's disease pathologies and cognitive disorders via PUFA-associated neuroinflammation.	Chen C, Liao J, Xia Y, Liu X, Jones R, Haran J, McCormick B, Sampson TR, Alam A, Ye K.	Gut	10.1136/gutjnl-2021-326269	2022
Genetics	Evaluative profiling of arsenic sensing and regulatory systems in the human microbiome project genomes.	Isokpehi RD, Udensi UK, Simmons SS, Hollman AL, Cain AE, Olofinsae SA, Hassan OA, Kashim ZA, Enejoh OA, Fasesan DE, Nashiru O.	Microbiol Insights	10.4137/mbi.s18076	2014
Metabolism	Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes.	Dodd D, Mackie RI, Cann IK.	Mol Microbiol	10.1111/j.1365-2958.2010.07473.x	2011
	The waxy mutation in sorghum and other cereal grains reshapes the gut microbiome by reducing levels of multiple beneficial species.	Yang Q, Van Haute M, Korth N, Sattler S, Rose D, Juritsch A, Shao J, Beede K, Schmaltz R, Price J, Toy J, Ramer-Tait AE, Benson AK.	Gut Microbes	10.1080/19490976.2023.2178799	2023
	Limited Neonatal Carbohydrate-Specific Antibody Repertoire Consecutive to Partial Prenatal Transfer of Maternal Antibodies.	Kappler K, Restin T, Lasanajak Y, Smith DF, Bassler D, Hennet T.	Front Immunol	10.3389/fimmu.2020.573629	2020
Metabolism	Novel xylan-degrading enzymes from polysaccharide utilizing loci of Prevotella copri DSM18205.	Linares-Pasten JA, Hero JS, Pisa JH, Teixeira C, Nyman M, Adlercreutz P, Martinez MA, Karlsson EN.	Glycobiology	10.1093/glycob/cwab056	2021
Pathogenicity	Microbiota-derived bile acids antagonize the host androgen receptor and drive anti-tumor immunity.	Jin WB, Xiao L, Jeong M, Han SJ, Zhang W, Yano H, Shi H, Arifuzzaman M, Lyu M, Wang D, Tang YA, Qiao S, JRI IBD Live Cell Bank Consortium, Yang X, Yang HS, Fu J, Sonnenberg GF, Collins N, Artis D, Guo CJ.	Cell	10.1016/j.cell.2025.02.029	2025
Metabolism	Characterization of an invertase with pH tolerance and truncation of its N-terminal to shift optimum activity toward neutral pH.	Du L, Pang H, Wang Z, Lu J, Wei Y, Huang R.	PLoS One	10.1371/journal.pone.0062306	2013
Metabolism	Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.	Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.	Cell	10.1016/j.cell.2023.05.037	2023
	GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance.	Otaru N, Ye K, Mujezinovic D, Berchtold L, Constancias F, Cornejo FA, Krzystek A, de Wouters T, Braegger C, Lacroix C, Pugin B.	Front Microbiol	10.3389/fmicb.2021.656895	2021
Phylogeny	GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems.	Zhou F, Chen H, Xu Y.	BMC Microbiol	10.1186/1471-2180-10-69	2010
	Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria.	Shuoker B, Pichler MJ, Jin C, Sakanaka H, Wu H, Gascuena AM, Liu J, Nielsen TS, Holgersson J, Nordberg Karlsson E, Juge N, Meier S, Morth JP, Karlsson NG, Abou Hachem M.	Nat Commun	10.1038/s41467-023-37533-6	2023
Pathogenicity	Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance.	Choi J, Rieke EL, Moorman TB, Soupir ML, Allen HK, Smith SD, Howe A.	FEMS Microbiol Ecol	10.1093/femsec/fiy006	2018
	Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients.	Ishaq HM, Mohammad IS, Shahzad M, Ma C, Raza MA, Wu X, Guo H, Shi P, Xu J.	Int J Biol Sci	10.7150/ijbs.24151	2018
Metabolism	Structure-dependent stimulation of gut bacteria by arabinoxylo-oligosaccharides (AXOS): a review.	Leschonski KP, Mortensen MS, Hansen LBS, Krogh KBRM, Kabel MA, Laursen MF.	Gut Microbes	10.1080/19490976.2024.2430419	2024
	Autometa: automated extraction of microbial genomes from individual shotgun metagenomes.	Miller IJ, Rees ER, Ross J, Miller I, Baxa J, Lopera J, Kerby RL, Rey FE, Kwan JC.	Nucleic Acids Res	10.1093/nar/gkz148	2019
Metabolism	Structural and functional aspects of mannuronic acid-specific PL6 alginate lyase from the human gut microbe Bacteroides cellulosilyticus.	Stender EGP, Dybdahl Andersen C, Fredslund F, Holck J, Solberg A, Teze D, Peters GHJ, Christensen BE, Christensen BE, Aachmann FL, Welner DH, Svensson B.	J Biol Chem	10.1074/jbc.ra119.010206	2019
	Sequence of pilin from Bacteroides nodosus 351 (Serogroup H) and implications for serogroup classification.	Hoyne PA, Elleman TC, McKern NM, Stewart DJ.	J Gen Microbiol	10.1099/00221287-135-5-1113	1989
Pathogenicity	Procyanidin-Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro.	Le Bourvellec C, Bagano Vilas Boas P, Lepercq P, Comtet-Marre S, Auffret P, Ruiz P, Bott R, Renard CMGC, Dufour C, Chatel JM, Mosoni P.	Nutrients	10.3390/nu11030664	2019
Metabolism	Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes.	Dodd D, Moon YH, Swaminathan K, Mackie RI, Cann IK.	J Biol Chem	10.1074/jbc.m110.141788	2010
Metabolism	Diastereomer-specific quantification of bioactive hexosylceramides from bacteria and mammals.	von Gerichten J, Schlosser K, Lamprecht D, Morace I, Eckhardt M, Wachten D, Jennemann R, Grone HJ, Mack M, Sandhoff R.	J Lipid Res	10.1194/jlr.d076190	2017
Metabolism	Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23.	Dodd D, Kocherginskaya SA, Spies MA, Beery KE, Abbas CA, Mackie RI, Cann IK.	J Bacteriol	10.1128/jb.01628-08	2009
	Design, construction, and in vivo augmentation of a complex gut microbiome.	Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.	Cell	10.1016/j.cell.2022.08.003	2022
Metabolism	In vitro kinetics of prebiotic inulin-type fructan fermentation by butyrate-producing colon bacteria: implementation of online gas chromatography for quantitative analysis of carbon dioxide and hydrogen gas production.	Falony G, Verschaeren A, De Bruycker F, De Preter V, Verbeke K, Leroy F, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.00876-09	2009
	Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements.	Coyne MJ, Roelofs KG, Comstock LE.	BMC Genomics	10.1186/s12864-016-2377-z	2016
Metabolism	Cross-feeding between Bifidobacterium longum BB536 and acetate-converting, butyrate-producing colon bacteria during growth on oligofructose.	Falony G, Vlachou A, Verbrugghe K, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.01296-06	2006
	Resistance of Capnocytophaga canimorsus to killing by human complement and polymorphonuclear leukocytes.	Shin H, Mally M, Meyer S, Fiechter C, Paroz C, Zaehringer U, Cornelis GR.	Infect Immun	10.1128/iai.01324-08	2009
Enzymology	Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.	Yoshida S, Hespen CW, Beverly RL, Mackie RI, Cann IK.	J Bacteriol	10.1128/jb.00503-10	2010
Phylogeny	Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates.	Kampmann K, Ratering S, Kramer I, Schmidt M, Zerr W, Schnell S.	Appl Environ Microbiol	10.1128/aem.06394-11	2012
	Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.	Peer A, Smith SP, Bayer EA, Lamed R, Borovok I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01420.x	2009
	The effect of culturing temperature on the growth of the most dominant bacterial species of human gut microbiota and harmful bacterial species.	Shimokawa H, Sakakibara H, Ami Y, Hirano R, Kurihara S.	Biosci Microbiota Food Health	10.12938/bmfh.2024-087	2025
	Development of culture methods capable of culturing a wide range of predominant species of intestinal bacteria.	Hirano R, Nishita I, Nakai R, Bito A, Sasabe R, Kurihara S.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1056866	2023
	Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.	Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.	Eng Microbiol	10.1016/j.engmic.2024.100147	2024
Metabolism	Probiotics in human gut microbiota can degrade host glycosaminoglycans.	Kawai K, Kamochi R, Oiki S, Murata K, Hashimoto W.	Sci Rep	10.1038/s41598-018-28886-w	2018
	Characterizing the interactions between a naturally primed immunoglobulin A and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice.	Peterson DA, Planer JD, Guruge JL, Xue L, Downey-Virgin W, Goodman AL, Seedorf H, Gordon JI.	J Biol Chem	10.1074/jbc.m114.633800	2015
Pathogenicity	Molecular and Biochemical Analyses of a Novel Trifunctional Endoxylanase/Endoglucanase/Feruloyl Esterase from the Human Colonic Bacterium Bacteroides intestinalis DSM 17393.	Zhang R, Lin D, Zhang L, Zhan R, Wang S, Wang K	J Agric Food Chem	10.1021/acs.jafc.2c01019	2022
	Bacteroides intestinalis DSM 17393, a member of the human colonic microbiome, upregulates multiple endoxylanases during growth on xylan.	Wang K, Pereira GV, Cavalcante JJ, Zhang M, Mackie R, Cann I	Sci Rep	10.1038/srep34360	2016
Enzymology	Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393.	Hong PY, Iakiviak M, Dodd D, Zhang M, Mackie RI, Cann I	Appl Environ Microbiol	10.1128/AEM.03176-13	2014
Genetics	Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium.	Cassir N, Croce O, Pagnier I, Benamar S, Couderc C, Robert C, Raoult D, La Scola B.	Stand Genomic Sci	10.4056/sigs.5159098	2014
Phylogeny	Thiomonas bhubaneswarensis sp. nov., an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium.	Panda SK, Jyoti V, Bhadra B, Nayak KC, Shivaji S, Rainey FA, Das SK.	Int J Syst Evol Microbiol	10.1099/ijs.0.007120-0	2009
Phylogeny	Bacteroides intestinalis sp. nov., isolated from human faeces.	Bakir MA, Kitahara M, Sakamoto M, Matsumoto M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.63914-0	2006

References

#6945	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17393
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27907	IJSEM 151 2006 ( DOI 10.1099/ijs.0.63914-0 , PubMed 16403880 )
#31621	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27907
#60058	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53889
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides intestinalis (CCUG 53889, DSM 17393, JCM 13265)

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