Name: Bacteroides intestinalis 341
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1609

Type strain:

Species: Bacteroides intestinalis

Strain Designation: 341

Culture col. no.: CCUG 53889, DSM 17393, JCM 13265

Strain history: M. Kitahara 341 <-- M. Matsumoto 341.

NCBI tax ID(s): 471870 (strain), 329854 (species)

SI-ID 289856

DSM 17393, JCM 13265, CCUG 53889, VTT E-093114

Other strains from Bacteroides intestinalis

B. intestinalis CCUG 70557
B. intestinalis APC919/174, DSM 108646
B. intestinalis JCM 13266

Section

Bacteroides intestinalis 341 is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from human faeces.

Gram-negative
rod-shaped
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides intestinalis**
	Full Scientific Name (LPSN)	Bacteroides intestinalis Bakir et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31621]	Gram stain	negative

[Ref.: #31621]	Cell length	01-05 µm

[Ref.: #31621]	Cell width	0.8 µm

[Ref.: #31621]	Cell shape	rod-shaped

[Ref.: #31621]	Motility	no

[Ref.: #6945]	Type of hemolysis	alpha/beta
[Ref.: #6945]	Hemolysis ability	1
[Ref.: #6945]	Incubation period	1-2 days

[Ref.: #60058]	Incubation period	2 days

[Ref.: #31621]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6945]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6945]

Culture medium growth

[Ref.: #6945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6945]

Culture medium composition

expand / minimize

[Ref.: #6945]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #6945]

Culture medium growth

[Ref.: #6945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6945]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6945]	growth	37 °C
[Ref.: #31621]	growth	37 °C
[Ref.: #31621]	optimum	37 °C
[Ref.: #60058]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #6945]	Temperature range	mesophilic
[Ref.: #31621]	Temperature range	mesophilic
[Ref.: #60058]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31621]			optimum	7
[Ref.: #31621]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6945]	Oxygen tolerance	anaerobe
[Ref.: #31621]	Oxygen tolerance	anaerobe
[Ref.: #60058]	Oxygen tolerance	anaerobe

[Ref.: #31621]

Ability of spore formation

[Ref.: #31621]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31621]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31621]	cellobiose ChEBI	+	carbon source
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #31621]	esculin ChEBI	+	hydrolysis
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #31621]	glucose ChEBI	+	carbon source
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	+	builds acid from	* from API 20A
[Ref.: #31621]	lactose ChEBI	+	carbon source
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #31621]	maltose ChEBI	+	carbon source
[Ref.: #31621]	mannose ChEBI	+	carbon source
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #31621]	raffinose ChEBI	+	carbon source
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #31621]	rhamnose ChEBI	+	carbon source
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #31621]	sucrose ChEBI	+	carbon source
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	+	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
[Ref.: #31621]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31621]		indole ChEBI	yes
[Ref.: #68367]		indole ChEBI	yes	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #31621]		indole ChEBI	+
[Ref.: #68380]		indole ChEBI	+	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A, API 20A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #6945]	2022	+	-	+	-	+	+	+/-	-	+	+	-	+	-	+/-	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #6945]	2021	+	-	+	-	+	+	+	-	+	+	-	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6945]	12952	-	-	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #6945]	12209	-	-	+	+	-	-	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #6945]	12208	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #6945]	12207	-	-	+	+	-	-	+	+	-	+	+/-	-	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6945]	Sample type/isolated from	human faeces
[Ref.: #6945]	Country	Japan
[Ref.: #6945]	Country ISO 3 Code	JPN
[Ref.: #6945]	Continent	Asia

[Ref.: #60058]	Sample type/isolated from	Human feces,healthy 32-yr-old female Japanese
[Ref.: #60058]	Country	Japan
[Ref.: #60058]	Country ISO 3 Code	JPN
[Ref.: #60058]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB214328 (>99% sequence identity) for Bacteroides intestinalis subclade from Microbeatlas

Aquatic Samples	1390
Soil Samples	511
Animal Samples	71273
Plant Samples	242
Total Samples	73416

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6945]	Pathogenicity (human)	yes, in single cases
[Ref.: #6945]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6945]	Bacteroides intestinalis gene for 16S rRNA, partial sequence, strain:JCM 13265	AB214328	1484	ENA	471870 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides intestinalis DSM 17393	GCA_000172175	contig	GenBank	471870 tax ID
[Ref.: #66792]	Bacteroides intestinalis DSM 17393	471870.8	wgs	PATRIC	471870 tax ID	*
[Ref.: #66792]	Bacteroides intestinalis 341, DSM 17393	642791621	draft	JGI IMG/M	471870 tax ID	*

[Ref.: #6945]	GC-content	44 mol%
[Ref.: #6945]	GC-content	42.7 mol%	sequence analysis
[Ref.: #67770]	GC-content	44 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides intestinalis DSM 17393 PATRIC: 471870.8
[Ref.: #69480]	gram-positive	no	96.847	yes
[Ref.: #69480]	anaerobic	yes	94.479	yes
[Ref.: #69480]	halophile	no	93.421	no
[Ref.: #69480]	spore-forming	no	91.493	yes
[Ref.: #69480]	glucose-util	yes	87.923	no
[Ref.: #69480]	aerobic	no	95.013	yes
[Ref.: #69480]	flagellated	no	97.472	yes
[Ref.: #69480]	thermophile	no	99.212	yes
[Ref.: #69480]	motile	no	90.622	no
[Ref.: #69480]	glucose-ferment	yes	70.814	no

Availability in culture collections External links

[Ref.: #6945]

Culture collection no.

CCUG 53889, DSM 17393, JCM 13265

[Ref.: #71254]

SI-ID 289856

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Molecular and Biochemical Analyses of a Novel Trifunctional Endoxylanase/Endoglucanase/Feruloyl Esterase from the Human Colonic Bacterium Bacteroides intestinalis DSM 17393.	Zhang R, Lin D, Zhang L, Zhan R, Wang S, Wang K	J Agric Food Chem	10.1021/acs.jafc.2c01019	2022	*
Enzymology	Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393.	Hong PY, Iakiviak M, Dodd D, Zhang M, Mackie RI, Cann I	Appl Environ Microbiol	10.1128/AEM.03176-13	2014	*
Phylogeny	Bacteroides intestinalis sp. nov., isolated from human faeces.	Bakir MA, Kitahara M, Sakamoto M, Matsumoto M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.63914-0	2006	*
	Bacteroides intestinalis DSM 17393, a member of the human colonic microbiome, upregulates multiple endoxylanases during growth on xylan.	Wang K, Pereira GV, Cavalcante JJ, Zhang M, Mackie R, Cann I	Sci Rep	10.1038/srep34360	2016	*

References

#6945

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17393

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31621

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27907 (see below)

#60058 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53889

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71254

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289856.1 )

#27907

IJSEM 151 2006 ( DOI 10.1099/ijs.0.63914-0 , PubMed 16403880 )

* These data were automatically processed and therefore are not curated

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Bacteroides intestinalis DSM 17393

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