Phocaeicola plebeius (CCUG 54634, DSM 17135, JCM 12973)

Name: Phocaeicola plebeius (CCUG 54634, DSM 17135, JCM 12973)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1607

Type strain

Strain Designation M12

Culture col. no. CCUG 54634 DSM 17135 JCM 12973 M12

NCBI tax ID(s) 484018 310297

Special Collections DSMZ CCUG JCM Literature strains

History <- Maki Kitahara, M12 M. Kitahara M12.

Links

Phocaeicola plebeius M12 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human feces.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 231847

JCM 12973,DSM 17135,CCUG 54634

@ref 20215

Last LPSN update 2026-02-09 11:18:08

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Phocaeicola

Species Phocaeicola plebeius

Full scientific name Phocaeicola plebeius (Kitahara et al. 2005) García-López et al. 2020

Synonyms (1)

Bacteroides plebeius

BacDive ID	Other strains from **Phocaeicola plebeius** (5)	Type strain
161290	P. plebeius JCM 12974
161291	P. plebeius JCM 12975
161292	P. plebeius JCM 12976
161293	P. plebeius JCM 12977
161294	P. plebeius JCM 12978

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31548	negative	3 µm	0.8 µm	rod-shaped
125439	negative				96.6
125438	negative				96.81

Colony morphology

@ref	Incubation period
6782	3-7 days
60271	2 days

Pigmentation

31548

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6782	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6782	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78; with strain-specific modifications) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) Yeast extract 5.0 g/l K2HPO4 5.0 g/l Pectin 0.5 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6782	positive	growth	37
31548	positive	optimum	37
60271	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6782	anaerobe
31548	anaerobe
60271	anaerobe
125438	anaerobe	92.426
125439	anaerobe	99.8

Spore formation

@ref	Spore formation	Confidence
31548
125439		99.3
125438		92.479

Observation

@ref	Observation
31548	aggregates in clumps
67770	quinones: MK-10, MK-11

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31548	22599 ChEBI	arabinose	+	carbon source
31548	17057 ChEBI	cellobiose	+	carbon source
31548	4853 ChEBI	esculin	+	hydrolysis
31548	17234 ChEBI	glucose	+	carbon source
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
31548	17716 ChEBI	lactose	+	carbon source
31548	17306 ChEBI	maltose	+	carbon source
31548	37684 ChEBI	mannose	+	carbon source
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
31548	16634 ChEBI	raffinose	+	carbon source
31548	26546 ChEBI	rhamnose	+	carbon source
31548	17992 ChEBI	sucrose	+	carbon source
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
31548	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
31548	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
31548	alpha-galactosidase	+	3.2.1.22
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
60271	-	+	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
60271	-	-	+	+	-	-	+	+	-	+	-	-	-	-	-	-	+	+	-	+	-	+	-	-	+	+	-	-	-
6782	-	+/-	+	+	-	+/-	+/-	+/-	-	+	-	-	-	-	-	-	+	+	-	+	-	+	-	-	+	+	+/-	+	-
6782	-	-	+	+	-	+/-	-	+/-	-	+	+/-	+/-	-	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-
6782	-	+/-	+	+	-	+	+	+	-	+	+/-	+	-	+	-	-	+	+	not determinedn.d.	+	+	+	-	+/-	+	+	+	+	-
6782	-	-	+	+	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6782	human feces	Japan	JPN	Asia
60271	Human faeces	Japan	JPN	Asia
67770	Human feces

Taxonmaps

69479

Global distribution of 16S sequence AB200217 (>99% sequence identity) for Phocaeicola plebeius subclade from Microbeatlas

Aquatic Samples	1112
Soil Samples	244
Animal Samples	36355
Plant Samples	94
Total Samples	37805

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6782	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM18789v1 assembly for Phocaeicola plebeius DSM 17135	scaffold	GCA_000187895	484018.6	642979351	484018	74.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6782	Bacteroides plebeius gene for 16S rRNA, partial sequence, strain: M12	AB200217	1490		484018

GC content

@ref	GC-content (mol%)	Method
6782	43.9
67770	43.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Phocaeicola plebeius DSM 17135
NCBI: GCA_000187895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	82.80	no
125439	gram_stain	BacteriaNetⓘ	negative	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides plebeius DSM 17135
PATRIC: 484018.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.81	yes
125438	anaerobic	anaerobicⓘ	yes	92.43	yes
125438	spore-forming	spore-formingⓘ	no	92.48	yes
125438	aerobic	aerobicⓘ	no	95.24	no
125438	thermophilic	thermophileⓘ	no	93.31	yes
125438	flagellated	motile2+ⓘ	no	88.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations.	Segurel L, Ulaganathan TS, Mathieu S, Loiodice M, Poulet L, Drouillard S, Cygler M, Helbert W.	PLoS One	10.1371/journal.pone.0329457	2025
	The alteration of fecal microbial and metabolic profile of gallstone patients in Taiwan: Single-center study.	Chang TE, Huang KH, Luo JC, Huang YH, Lin HH, Fang WL, Hou MC.	J Chin Med Assoc	10.1097/jcma.0000000000001094	2024
	Identification and Characterization of a Novel alpha-L-Fucosidase from Enterococcus gallinarum and Its Application for Production of 2'-Fucosyllactose.	Zhang Z, Li Y, Wu M, Gao Z, Wu B, He B.	Int J Mol Sci	10.3390/ijms241411555	2023
	Substrate Specificity of GH29 alpha-L-Glucosidases from Cecembia lonarensis.	Kang HJ, Tagami T, Okuyama M.	J Appl Glycosci (1999)	10.5458/jag.jag.jag-2024_0004	2024
	Alterations of Gut Microbiome Composition and Function Pre- and Post-Adenotonsillectomy in Children with Obstructive Sleep Apnea.	Chuang HH, Lee LA, Chuang LP, Li HY, Huang YS, Chou SH, Lee GS, Kuo TBJ, Yang CCH, Huang CG.	J Otolaryngol Head Neck Surg	10.1177/19160216241293070	2024
	Differences in gut microbiota between allergic rhinitis, atopic dermatitis, and skin urticaria: A pilot study.	Su YJ, Luo SD, Hsu CY, Kuo HC.	Medicine (Baltimore)	10.1097/md.0000000000025091	2021
	Changes in the intestinal microbiota of broiler chicken induced by dietary supplementation of the diatomite-bentonite mixture.	Wesierska E, Micek P, Adamski MG, Gondek K, Lis M, Trela M, Wojtysiak D, Kowal J, Wyrobisz-Papiewska A, Kunstman G, Mosiolek S, Smoron K.	BMC Vet Res	10.1186/s12917-024-04439-4	2025
	alpha-L-Fucosidases from an Alpaca Faeces Metagenome: Characterisation of Hydrolytic and Transfucosylation Potential.	Krupinskaite A, Stanislauskiene R, Serapinas P, Rutkiene R, Gasparaviciute R, Meskys R, Stankeviciute J.	Int J Mol Sci	10.3390/ijms25020809	2024
Enzymology	In situ identifying sennoside A-reducing bacteria guilds in human gut microbiota via enzymatic activity visualization.	Zhai C, Liu X, Liu Z, Ma H, Li H, Gong Y, Li X, Wang Y, Zhang N, Zhang H, Luo G, Wang Y, Gao X.	Gut Microbes	10.1080/19490976.2025.2560598	2025
Metabolism	Metabolic and enzymatic elucidation of cooperative degradation of red seaweed agarose by two human gut bacteria.	Yun EJ, Yu S, Park NJ, Cho Y, Han NR, Jin YS, Kim KH.	Sci Rep	10.1038/s41598-021-92872-y	2021
Metabolism	Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288^T and their roles in cooperation with gut bacteria.	Singh RP, Rajarammohan S, Thakur R, Hassan M.	Gut Microbes	10.1080/19490976.2020.1826761	2020
	Comparative Study of the Gut Microbiota Among Four Different Marine Mammals in an Aquarium.	Bai S, Zhang P, Zhang C, Du J, Du X, Zhu C, Liu J, Xie P, Li S.	Front Microbiol	10.3389/fmicb.2021.769012	2021
	A Bacteroides thetaiotaomicron genetic locus encodes activities consistent with mucin O-glycoprotein processing and N-acetylgalactosamine metabolism.	Ndeh DA, Nakjang S, Kwiatkowski KJ, Sawyers C, Koropatkin NM, Hirt RP, Bolam DN.	Nat Commun	10.1038/s41467-025-58660-2	2025
Genetics	Investigating Host Microbiota Relationships Through Functional Metagenomics.	Laville E, Perrier J, Bejar N, Maresca M, Esque J, Tauzin AS, Bouhajja E, Leclerc M, Drula E, Henrissat B, Berdah S, Di Pasquale E, Robe P, Potocki-Veronese G.	Front Microbiol	10.3389/fmicb.2019.01286	2019
Genetics	Investigating host-microbiome interactions by droplet based microfluidics.	Tauzin AS, Pereira MR, Van Vliet LD, Colin PY, Laville E, Esque J, Laguerre S, Henrissat B, Terrapon N, Lombard V, Leclerc M, Dore J, Hollfelder F, Potocki-Veronese G.	Microbiome	10.1186/s40168-020-00911-z	2020
Metabolism	Production of neoagarooligosaccharides by probiotic yeast Saccharomyces cerevisiae var. boulardii engineered as a microbial cell factory.	Jin Y, Yu S, Liu JJ, Yun EJ, Lee JW, Jin YS, Kim KH.	Microb Cell Fact	10.1186/s12934-021-01644-w	2021
	Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.	Shishiuchi R, Kang H, Tagami T, Ueda Y, Lang W, Kimura A, Okuyama M.	ACS Omega	10.1021/acsomega.2c06991	2022
Metabolism	A Novel Family of RNA-Binding Proteins Regulate Polysaccharide Metabolism in Bacteroides thetaiotaomicron.	Adams AND, Azam MS, Costliow ZA, Ma X, Degnan PH, Vanderpool CK.	J Bacteriol	10.1128/jb.00217-21	2021
	Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients.	Ishaq HM, Mohammad IS, Shahzad M, Ma C, Raza MA, Wu X, Guo H, Shi P, Xu J.	Int J Biol Sci	10.7150/ijbs.24151	2018
	Molecular cloning, expression, and functional characterization of the beta-agarase AgaB-4 from Paenibacillus agarexedens.	Chen ZW, Lin HJ, Huang WC, Hsuan SL, Lin JH, Wang JP.	AMB Express	10.1186/s13568-018-0581-8	2018
Metabolism	Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.	Pluvinage B, Grondin JM, Amundsen C, Klassen L, Moote PE, Xiao Y, Thomas D, Pudlo NA, Anele A, Martens EC, Inglis GD, Uwiera RER, Boraston AB, Abbott DW.	Nat Commun	10.1038/s41467-018-03366-x	2018
Metabolism	A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3^T.	Pathiraja D, Christiansen L, Park B, Schultz-Johansen M, Bang G, Stougaard P, Choi IG.	Appl Environ Microbiol	10.1128/aem.00230-21	2021
	Horizontal Transfer of a Novel Soil Agarase Gene from Marine Bacteria to Soil Bacteria via Human Microbiota.	Song T, Xu H, Wei C, Jiang T, Qin S, Zhang W, Cao Y, Hu C, Zhang F, Qiao D, Cao Y.	Sci Rep	10.1038/srep34103	2016
Enzymology	Diversity and abundance of single-stranded DNA viruses in human feces.	Kim MS, Park EJ, Roh SW, Bae JW.	Appl Environ Microbiol	10.1128/aem.06331-11	2011
	Gut microbiota and old age: Modulating factors and interventions for healthy longevity.	Coman V, Vodnar DC.	Exp Gerontol	10.1016/j.exger.2020.111095	2020
	The prevalence of species and strains in the human microbiome: a resource for experimental efforts.	Kraal L, Abubucker S, Kota K, Fischbach MA, Mitreva M.	PLoS One	10.1371/journal.pone.0097279	2014
Metabolism	Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes.	Hehemann JH, Kelly AG, Pudlo NA, Martens EC, Boraston AB.	Proc Natl Acad Sci U S A	10.1073/pnas.1211002109	2012
Metabolism	Prospecting for microbial alpha-N-acetylgalactosaminidases yields a new class of GH31 O-glycanase.	Rahfeld P, Wardman JF, Mehr K, Huff D, Morgan-Lang C, Chen HM, Hallam SJ, Withers SG.	J Biol Chem	10.1074/jbc.ra119.010628	2019
Metabolism	Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks.	Ravcheev DA, Godzik A, Osterman AL, Rodionov DA.	BMC Genomics	10.1186/1471-2164-14-873	2013
Genetics	Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes.	Magnusdottir S, Ravcheev D, de Crecy-Lagard V, Thiele I.	Front Genet	10.3389/fgene.2015.00148	2015
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
	Gut colonization of Bacteroides plebeius suppresses colitis-associated colon cancer development.	Chen H-L, Hu P-Y, Chen C-S, Lin W-H, Hsu DK, Liu F-T, Meng T-C.	Microbiol Spectr	10.1128/spectrum.02599-24	2025
Enzymology	Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal.	Kearney SM, Gibbons SM, Erdman SE, Alm EJ	Cell Rep	10.1016/j.celrep.2018.07.032	2018
Pathogenicity	Altered gut microbiota correlates with behavioral problems but not gastrointestinal symptoms in individuals with autism.	Chen YC, Lin HY, Chien Y, Tung YH, Ni YH, Gau SS	Brain Behav Immun	10.1016/j.bbi.2022.08.015	2022
	Phocaeicola acetigenes sp. nov., producing acetic acid and iso-butyric acid, isolated faeces from a healthy human.	Do HE, Ha YB, Kim JS, Suh MK, Kim HS, Eom MK, Lee JH, Park SH, Kang SW, Lee DH, Yoon H, Lee JH, Lee JS.	Antonie Van Leeuwenhoek	10.1007/s10482-024-01930-8	2024
Phylogeny	Sphingosinicella cucumeris sp. nov., isolated from soil of a cucumber garden.	Akter S, Du J, Won K, Yin CS, Kook M, Yi TH.	Antonie Van Leeuwenhoek	10.1007/s10482-015-0572-6	2015
Genetics	Noncontiguous finished genome sequence and description of Mediterranea massiliensis gen. nov., sp. nov., a new member of the Bacteroidaceae family isolated from human colon.	Ngom II, Mailhe M, Ricaboni D, Vitton V, Benezech A, Khelaifia S, Michelle C, Cadoret F, Armstrong N, Levasseur A, Raoult D, Million M.	New Microbes New Infect	10.1016/j.nmni.2017.11.009	2018
Phylogeny	Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca.	Kralova S, Davidova-Gerzova L, Valcek A, Bezdicek M, Rychlik I, Rezacova V, Cizek A.	Microbiol Spectr	10.1128/spectrum.01954-21	2022
Phylogeny	Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum.	Lan PTN, Sakamoto M, Sakata S, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64517-0	2006
Phylogeny	Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces.	Kitahara M, Sakamoto M, Ike M, Sakata S, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.63788-0	2005

References

#6782	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17135
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27839	IJSEM 2143 2005 ( DOI 10.1099/ijs.0.63788-0 , PubMed 16166722 )
#31548	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27839
#60271	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54634
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phocaeicola plebeius (CCUG 54634, DSM 17135, JCM 12973)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

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