Name: Streptomyces vinaceus Jones 8542-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16075

Type strain:

Species: Streptomyces vinaceus

Strain Designation: Jones 8542-1

Culture col. no.: DSM 40515, ATCC 27476, CBS 726.72, ETH 28394, IFO 13425, ISP 5515, NBRC 13425, NRRL 2382, RIA 1386, JCM 4090, BCRC 11865, HUT 6082, JCM 4849, KCTC 9771, PCM 2366, RIA 805

Strain history: KCC S-0090 <-- H. Yonehara <-- NRRL 2382 <-- K. L. Jones 8542-1.

NCBI tax ID(s): 1960 (species)

SI-ID 39021

ATCC 27476, IFO 13425, DSM 40515, NRRL 2382, JCM 4090, CCRC 11865, HUT 6082, JCM 4849, NRRL B-2382, CBS 726.72, KCTC 9771, NBRC 13425, BCRC 11865, CGMCC 4.1305, AS 4.1305

Special Collections

Other strains from Streptomyces vinaceus

Section

Streptomyces vinaceus Jones 8542-1 is a spore-forming bacterium of the family Streptomycetaceae.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces vinaceus**
	Full Scientific Name (LPSN)	Streptomyces vinaceus Jones 1952 (Approved Lists 1980)

Synonym

Streptomyces arabicus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.579

Multimedia content

[Ref.: #9611]

Caption:

Medium 84 28°C

[Ref.: #9611]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9611]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9611]

Culture medium growth

[Ref.: #9611]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9611]

Culture medium composition

expand / minimize

[Ref.: #9611]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9611]

Culture medium growth

[Ref.: #9611]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9611]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9611]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.334
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9611]

Name of produced compound

vitamin B₁₂

	Metabolite production	Metabolite	Production
[Ref.: #67770]		vitamin B12 ChEBI	yes

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9611]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces vinaceus strain CGMCC 4.1305 16S ribosomal RNA gene, partial sequence	EU048541	1395	GenBank ENA	1960 tax ID	*
[Ref.: #20218]	Streptomyces vinaceus gene for 16S rRNA, partial sequence	AB122737	564	GenBank ENA	1960 tax ID	*
[Ref.: #20218]	Streptomyces vinaceus strain ISP 5515 16S ribosomal RNA gene, partial sequence	AY999740	1447	GenBank ENA	1960 tax ID	*
[Ref.: #20218]	Streptomyces vinaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4849	D44405	120	GenBank ENA	1960 tax ID	*
[Ref.: #20218]	Streptomyces vinaceus gene for 16S rRNA, partial sequence, strain: NBRC 13425	AB184394	1467	GenBank ENA	1960 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces vinaceus ATCC 27476	GCA_008704935	complete	GenBank ENA	1960 tax ID	*
[Ref.: #66792]	Streptomyces vinaceus JCM 4849	GCA_014656155	scaffold	GenBank ENA	1960 tax ID	*
[Ref.: #66792]	Streptomyces vinaceus strain ATCC 27476	1960.10	complete	PATRIC	1960 tax ID	*
[Ref.: #66792]	Streptomyces vinaceus strain JCM 4849	1960.15	wgs	PATRIC	1960 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces vinaceus ATCC 27476 NCBI: GCA_008704935.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces vinaceus ATCC 27476 NCBI: GCA_008704935.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.579	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.869	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.905	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.334	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.991	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.6	no

Availability in culture collections External links

[Ref.: #9611]

Culture collection no.

DSM 40515, ATCC 27476, CBS 726.72, ETH 28394, IFO 13425, ISP 5515, NBRC 13425, NRRL 2382, RIA 1386, JCM 4090, BCRC 11865, HUT 6082, JCM 4849, KCTC 9771, PCM 2366, RIA 805

[Ref.: #85146]

SI-ID 39021

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	[Exploiting bioactive Enediynes from marine microbe based on activity and gene screening].	Pei G, Dai H, Ren B, Liu X, Zhang L	Wei Sheng Wu Xue Bao		2010	*

References

#9611

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40515

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85146

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39021.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces vinaceus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptomyces vinaceus ATCC 27476

Streptomyces vinaceus ATCC 27476

Change proposal

Change proposal