Strain identifier

BacDive ID: 16075

Type strain: Yes

Species: Streptomyces vinaceus

Strain Designation: Jones 8542-1

Strain history: KCC S-0090 <-- H. Yonehara <-- NRRL 2382 <-- K. L. Jones 8542-1.

NCBI tax ID(s): 1960 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9611

BacDive-ID: 16075

DSM-Number: 40515

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces vinaceus Jones 8542-1 is a spore-forming, mesophilic bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 1960
  • Matching level: species

strain history

@refhistory
9611<- E.B. Shirling, ISP <- NRRL, Jones 8542-1
67770KCC S-0090 <-- H. Yonehara <-- NRRL 2382 <-- K. L. Jones 8542-1.

doi: 10.13145/bacdive16075.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces vinaceus
  • full scientific name: Streptomyces vinaceus Jones 1952 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces arabicus

@ref: 9611

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces vinaceus

full scientific name: Streptomyces vinaceus Jones 1952 emend. Lanoot et al. 2004

strain designation: Jones 8542-1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no96.769
69480100positive

multimedia

  • @ref: 9611
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40515.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9611GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9611ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9611positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9611
  • compound: vitamin B12

metabolite production

  • @ref: 67770
  • Chebi-ID: 176843
  • metabolite: vitamin B12
  • production: yes

Safety information

risk assessment

  • @ref: 9611
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces vinaceus strain CGMCC 4.1305 16S ribosomal RNA gene, partial sequenceEU0485411395ena1960
20218Streptomyces vinaceus gene for 16S rRNA, partial sequenceAB122737564ena1960
20218Streptomyces vinaceus strain ISP 5515 16S ribosomal RNA gene, partial sequenceAY9997401447ena1960
20218Streptomyces vinaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4849D44405120ena1960
20218Streptomyces vinaceus gene for 16S rRNA, partial sequence, strain: NBRC 13425AB1843941467ena1960

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces vinaceus ATCC 27476GCA_008704935completencbi1960
66792Streptomyces vinaceus JCM 4849GCA_014656155scaffoldncbi1960
66792Streptomyces vinaceus strain ATCC 274761960.10completepatric1960
66792Streptomyces vinaceus strain JCM 48491960.15wgspatric1960

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.011no
gram-positiveyes88.524no
anaerobicno98.808no
aerobicyes89.287no
halophileno94.867no
spore-formingyes91.914no
thermophileno99.184yes
glucose-utilyes91.507no
motileno94.502no
glucose-fermentno87.186no

External links

@ref: 9611

culture collection no.: DSM 40515, ATCC 27476, CBS 726.72, ETH 28394, IFO 13425, ISP 5515, NBRC 13425, NRRL 2382, RIA 1386, JCM 4090, BCRC 11865, HUT 6082, JCM 4849, KCTC 9771, PCM 2366, RIA 805

straininfo link

  • @ref: 85146
  • straininfo: 39021

literature

  • topic: Pathogenicity
  • Pubmed-ID: 20560349
  • title: [Exploiting bioactive Enediynes from marine microbe based on activity and gene screening].
  • authors: Pei G, Dai H, Ren B, Liu X, Zhang L
  • journal: Wei Sheng Wu Xue Bao
  • year: 2010
  • mesh: Enediynes/*pharmacology, Genes, Bacterial/drug effects, *Marine Biology, Molecular Sequence Data, Multigene Family/*drug effects/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9611Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40515)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40515
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85146Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39021.1StrainInfo: A central database for resolving microbial strain identifiers