Name: Streptomyces rochei D-13 = U.C. 2007
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16076

Type strain:

Species: Streptomyces rochei

Strain Designation: D-13 = U.C. 2007

Culture col. no.: DSM 40470, ATCC 25511, CBS 653.69, IFO 13099, ISP 5470, NBRC 13099, NRRL 2363, RIA 1291, JCM 4529, BCRC 12170, CGMCC 4.1769, NCIMB 12980, NRRL ISP-5470, VKM Ac-1902

Strain history: KCC S-0529 <-- IFO 13099 <-- SAJ <-- ISP 5470 <-- NRRL 2363 <-- Upjohn Co., USA; UC 2007 (=D-13).

NCBI tax ID(s): 67376 (species)

Other strains from Streptomyces rochei

S. rochei X-15, DSM 40231, ATCC 10739, ATCC ... (type strain)
S. rochei K-5, DSM 40913
S. rochei 5E, ID 3818, DSM 41711
S. rochei 17G, DSM 41722
S. rochei 31A, DSM 41729
S. rochei 33B, DSM 41732
S. rochei 34B, ID 3846, DSM 41735
S. rochei 35A, ID 3848, DSM 41737
S. rochei JA 9767, JA 9769, DSM 46472, IMET ...
S. rochei STH00011(ZIMET), HKI 0011
S. rochei DSM 40916

Section

Streptomyces rochei D-13 = U.C. 2007 is a mesophilic bacterium that produces antibiotic compounds.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rochei**
	Full Scientific Name (LPSN)	Streptomyces rochei Berger et al. 1953 (Approved Lists 1980)

	Synonym	Streptomyces plicatus
	Synonym	Streptomyces enissocaesilis
	Synonym	Streptomyces geysiriensis
	Synonym	Streptomyces vinaceusdrappus

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9565]

Caption:

Medium 65 37°C

[Ref.: #9565]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9565]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9565]

Culture medium growth

[Ref.: #9565]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9565]

Culture medium composition

expand / minimize

[Ref.: #9565]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9565]

Culture medium growth

[Ref.: #9565]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9565]			growth	37 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9565]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9565]	Name of produced compound	amicetin
[Ref.: #9565]	Name of produced compound	amicetin B
[Ref.: #9565]	Name of produced compound	amicetin C
[Ref.: #9565]	Name of produced compound	streptolin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		amicetin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB184311 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	12
Animal Samples	16
Plant Samples
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9565]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces vinaceusdrappus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4529	D44214	121	ENA	67376 tax ID	*
[Ref.: #20218]	Streptomyces vinaceusdrappus gene for 16S rRNA, partial sequence, strain: NBRC 13099	AB184311	1469	ENA	67376 tax ID	*
[Ref.: #20218]	Streptomyces vinaceusdrappus strain NRRL 2363 16S ribosomal RNA gene, partial sequence	AY999929	1499	ENA	67376 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces vinaceusdrappus JCM 4529	GCA_014650215	scaffold	GenBank	67376 tax ID
[Ref.: #66792]	Streptomyces vinaceusdrappus strain JCM 4529	67376.3	wgs	PATRIC	67376 tax ID	*
[Ref.: #66792]	Streptomyces vinaceusdrappus NRRL 2363	2582581670	draft	JGI IMG/M	67376 tax ID	*

[Ref.: #67770]

GC-content

72.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces vinaceusdrappus strain JCM 4529 PATRIC: 67376.3
[Ref.: #69480]	gram-positive	yes	90.308	no
[Ref.: #69480]	anaerobic	no	99.227	no
[Ref.: #69480]	halophile	no	89.172	no
[Ref.: #69480]	spore-forming	yes	96.544	no
[Ref.: #69480]	glucose-util	yes	89.5	no
[Ref.: #69480]	thermophile	no	98.478	yes
[Ref.: #69480]	flagellated	no	98.123	no
[Ref.: #69480]	motile	no	94.268	no
[Ref.: #69480]	aerobic	yes	94.179	no
[Ref.: #69480]	glucose-ferment	no	89.207	no

Availability in culture collections External links

[Ref.: #9565]

Culture collection no.

DSM 40470, ATCC 25511, CBS 653.69, IFO 13099, ISP 5470, NBRC 13099, NRRL 2363, RIA 1291, JCM 4529, BCRC 12170, CGMCC 4.1769, NCIMB 12980, NRRL ISP-5470, VKM Ac-1902

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of the amicetin biosynthesis gene cluster from Streptomyces vinaceusdrappus NRRL 2363 implicates two alternative strategies for amide bond formation.	Zhang G, Zhang H, Li S, Xiao J, Zhang G, Zhu Y, Niu S, Ju J, Zhang C	Appl Environ Microbiol	10.1128/AEM.07185-11	2012	*

References

#9565

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40470

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces vinaceusdrappus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces vinaceusdrappus strain JCM 4529

Change proposal

Change proposal