Bacteroides acidifaciens (DSM 15896, JCM 10556, CCUG 51929)

Name: Bacteroides acidifaciens (DSM 15896, JCM 10556, CCUG 51929)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1606

Type strain

Strain Designation A40

Culture col. no. DSM 15896 JCM 10556 CCUG 51929 A40 BCRC 81230

NCBI tax ID(s) 1235814 85831

Special Collections DSMZ CCUG JCM Mouse

Links

Bacteroides acidifaciens A40 is an anaerobe, mesophilic prokaryote that was isolated from caecal content; wildtype C57BL/6 mouse.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100526

JCM 10556,DSM 15896,CCUG 51929

@ref 20215

Last LPSN update 2025-12-16 09:47:08

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides acidifaciens

Full scientific name Bacteroides acidifaciens Miyamoto and Itoh 2000

BacDive ID	Other strains from **Bacteroides acidifaciens** (2)	Type strain
131098	B. acidifaciens JJM0207_2, DSM 100502
175101	B. acidifaciens CLA-AP-2, DSM 111135

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.434
125439	negative	96.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6174	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
6174	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6174	positive	growth	37	mesophilic
59367	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6174	anaerobe
59367	anaerobe
125439	obligate anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.46
125439		99.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	starch degradation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	vitamin B1 metabolism	84.62	11 of 13
66794	vitamin B6 metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	peptidoglycan biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	purine metabolism	73.4	69 of 94
66794	flavin biosynthesis	73.33	11 of 15
66794	propanol degradation	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	propionate fermentation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	alanine metabolism	68.97	20 of 29
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	octane oxidation	66.67	2 of 3
66794	degradation of hexoses	66.67	12 of 18
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	d-xylose degradation	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	cellulose degradation	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	proline metabolism	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	selenocysteine biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	lysine metabolism	50	21 of 42
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	adipate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	butanoate fermentation	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	tryptophan metabolism	47.37	18 of 38
66794	sulfate reduction	46.15	6 of 13
66794	lipid metabolism	45.16	14 of 31
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arginine metabolism	41.67	10 of 24
66794	O-antigen biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	oxidative phosphorylation	38.46	35 of 91
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	urea cycle	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	heme metabolism	28.57	4 of 14
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
6174	-	-	+	+	-	+	+/-	+	-	+	-	-	-	+	-	-	+	+	-	+	-	+	-	-	+	-	-	-	-
6174	-	-	+	+	-	+	+/-	+	-	+	-	-	-	+	-	+	+	+/-	-	+	-	+	-	-	+	-	-	+/-	-
6174	-	-	+	+	-	+	-	+	-	+	+	+	-	+	-	+	+	+	-	+	-	+	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6174	caecal content; wildtype C57BL/6 mouse	Tokyo	Japan	JPN	Asia
59367	Mouse cecum
67770	Cecum of mice

Taxonmaps

69479

Global distribution of 16S sequence AB510696 (>99% sequence identity) for Bacteroides acidifaciens subclade from Microbeatlas

Aquatic Samples	1548
Soil Samples	1207
Animal Samples	168578
Plant Samples	483
Total Samples	171816

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6174	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2462306v1 assembly for Bacteroides acidifaciens DSM 15896	contig	GCA_024623065	85831.63	8111520505	85831	40.61
67770	ASM61338v1 assembly for Bacteroides acidifaciens JCM 10556	contig	GCA_000613385	1235814.4	2565956591	1235814

Genome browser: GCA_024623065

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacteroides acidifaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 10556	AB510696	1490	85831
20218	Bacteroides acidifaciens strain JCM10556 16S ribosomal RNA gene, partial sequence	EU136694	1968	85831
6174	Bacteroides acidofaciens DNA for 16S rRNA, strain A40	AB021164	1501	85831

GC content

@ref	GC-content (mol%)
6174	39.4-42.2
67770	41.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacteroides acidifaciens JCM 10556
NCBI: GCA_000613385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	78.90	no
125439	gram_stain	BacteriaNetⓘ	negative	96.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides acidifaciens JCM 10556
PATRIC: 1235814.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.43	no
125438	anaerobic	anaerobicⓘ	yes	82.06	yes
125438	spore-forming	spore-formingⓘ	no	92.46	no
125438	aerobic	aerobicⓘ	no	89.68	no
125438	thermophilic	thermophileⓘ	no	91.97	no
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Title	Authors	Journal	DOI	Year
Regulation of Bacteroides acidifaciens by the aryl hydrocarbon receptor in IL-22-producing immune cells has sex-dependent consequential impact on colitis.	Mitchell C, Staley S, Williams MC, Saxena A, Bogdon R, Roark K, Hailey M, Miranda K, Becker W, Dopkins N, Pena MM, Hogan KM, Baird M, Wilson K, Nagarkatti P, Nagarkatti M, Busbee PB.	Front Immunol	10.3389/fimmu.2024.1444045	2024
T-cell activation Rho GTPase-activating protein maintains intestinal homeostasis by regulating intestinal T helper cells differentiation through the gut microbiota.	He R, Chen J, Zhao Z, Shi C, Du Y, Yi M, Feng L, Peng Q, Cui Z, Gao R, Wang H, Huang Y, Liu Z, Wang C.	Front Microbiol	10.3389/fmicb.2022.1030947	2022
Dietary fibre-adapted gut microbiome clears dietary fructose and reverses hepatic steatosis.	Jung S, Bae H, Song WS, Chun Y, Le J, Alam Y, Verlande A, Chun SK, Kim J, Kelly ME, Lopez ML, Park SH, Onofre D, Baek J, Jang KH, Rubtsova VI, Anica A, Masri S, Lee G, Jang C.	Nat Metab	10.1038/s42255-025-01356-0	2025
Parabacteroides distasonis uses dietary inulin to suppress NASH via its metabolite pentadecanoic acid.	Wei W, Wong CC, Jia Z, Liu W, Liu C, Ji F, Pan Y, Wang F, Wang G, Zhao L, Chu ESH, Zhang X, Sung JJY, Yu J.	Nat Microbiol	10.1038/s41564-023-01418-7	2023
Association of Bacteroides acidifaciens relative abundance with high-fibre diet-associated radiosensitisation.	Then CK, Paillas S, Wang X, Hampson A, Kiltie AE.	BMC Biol	10.1186/s12915-020-00836-x	2020
Dietary fibre supplementation enhances radiotherapy tumour control and alleviates intestinal radiation toxicity.	Then CK, Paillas S, Moomin A, Misheva MD, Moir RA, Hay SM, Bremner D, Roberts Nee Nellany KS, Smith EE, Heidari Z, Sescu D, Wang X, Suarez-Bonnet A, Hay N, Murdoch SL, Saito R, Collie-Duguid ESR, Richardson S, Priestnall SL, Wilson JM, Gurumurthy M, Royle JS, Samuel LM, Ramsay G, Vallis KA, Foster KR, McCullagh JSO, Kiltie AE.	Microbiome	10.1186/s40168-024-01804-1	2024
Increased Antibody Response to Fucosylated Oligosaccharides and Fucose-Carrying Bacteroides Species in Crohn's Disease.	Kappler K, Lasanajak Y, Smith DF, Opitz L, Hennet T.	Front Microbiol	10.3389/fmicb.2020.01553	2020
Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.	Ronne ME, Tandrup T, Madsen M, Hunt CJ, Myers PN, Moll JM, Holck J, Brix S, Strube ML, Aachmann FL, Wilkens C, Svensson B.	Appl Environ Microbiol	10.1128/aem.01185-23	2023
Intestinal inflammation alters mucosal carbohydrate foraging and monosaccharide incorporation into microbial glycans.	Weiss GA, Grabinger T, Glaus Garzon J, Hasler T, Greppi A, Lacroix C, Khanzhin N, Hennet T.	Cell Microbiol	10.1111/cmi.13269	2021
Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing.	Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M.	Proc Natl Acad Sci U S A	10.1073/pnas.1219247110	2013
Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation.	Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ.	Cell Host Microbe	10.1016/j.chom.2020.12.008	2021
Occurrence of polyhalogenated carbazoles and the combined effects with heavy metals on variation in bacterial communities in estuarine sediments.	Hu S, Zheng M, Mu Y, Liu A, Jiang Y, Li Y, Ning K, Wang L.	Mar Pollut Bull	10.1016/j.marpolbul.2023.115873	2024
Gender-affirming hormone therapy preserves skeletal maturation in young mice via the gut microbiome.	Pal S, Morgan X, Dar HY, Gacasan CA, Patil S, Stoica A, Hu YJ, Weitzmann MN, Jones RM, Pacifici R.	J Clin Invest	10.1172/jci175410	2024
Alterations in intestinal microbiota and enzyme activities under cold-humid stress: implications for diarrhea in cold-dampness trapped spleen syndrome.	Wu Y, Deng N, Liu J, Jiang P, Tan Z.	Front Microbiol	10.3389/fmicb.2023.1288430	2023
A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.	Buzun E, Hsu CY, Sejane K, Oles RE, Vasquez Ayala A, Loomis LR, Zhao J, Rossitto LA, McGrosso DM, Gonzalez DJ, Bode L, Chu H.	Cell Host Microbe	10.1016/j.chom.2023.12.014	2024
Establishment of porcine fecal-derived ex vivo microbial communities to evaluate the impact of livestock feed on gut microbiome.	Tsujikawa Y, Nishiyama K, Namai F, Imamura Y, Sakuma T, Saha S, Suzuki M, Sakurai M, Iwata R, Matsuo K, Takamori H, Suda Y, Zhou B, Fukuda I, Villena J, Sakane I, Osawa R, Kitazawa H.	Biosci Microbiota Food Health	10.12938/bmfh.2023-085	2024
Target Metabolites to Slow Down Progression of Amyotrophic Lateral Sclerosis in Mice.	Ogbu D, Zhang Y, Claud K, Xia Y, Sun J.	Metabolites	10.3390/metabo12121253	2022
Alleviation of Intestinal Inflammation by Oral Supplementation With 2-Fucosyllactose in Mice.	Grabinger T, Glaus Garzon JF, Hausmann M, Geirnaert A, Lacroix C, Hennet T.	Front Microbiol	10.3389/fmicb.2019.01385	2019
A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Versatility of bacterial outer membrane vesicles in regulating intestinal homeostasis.	Wang X, Lin S, Wang L, Cao Z, Zhang M, Zhang Y, Liu R, Liu J.	Sci Adv	10.1126/sciadv.ade5079	2023
Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces.	Kitahara M, Sakamoto M, Tsuchida S, Kawasumi K, Amao H, Benno Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.032706-0	2011
Bacteroides acidifaciens sp. nov., isolated from the caecum of mice.	Miyamoto Y, Itoh K	Int J Syst Evol Microbiol	10.1099/00207713-50-1-145	2000

References

#6174	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15896
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#59367	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51929
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides acidifaciens (DSM 15896, JCM 10556, CCUG 51929)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Pathway annotation

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024623065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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