Name: Streptomyces termitum L.C. 620
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16040

Type strain:

Species: Streptomyces termitum

Strain Designation: L.C. 620

Culture col. no.: DSM 40329, ATCC 25499, CBS 959.69, IFO 13087, ISP 5329, NBRC 13087, RIA 1279, JCM 4518, BCRC 12592, CGMCC 4.1781, IMET 43127, NCIMB 9980, NRRL B-3804

Strain history: KCC S-0518 <-- IFO 13087 <-- SAJ <-- ISP 5329 <-- LCP 620.

NCBI tax ID(s): 67368 (species)

SI-ID 45760

ATCC 25499, IFO 13087, DSM 40329, JCM 4518, CCRC 12592, IMET 43127, NCIMB 9980, NRRL B-3804, CBS 959.69, NBRC 13087, BCRC 12592, NCIB 9980, CGMCC 4.1781, LMG 20289

Special Collections

DSMZ
JCM

Other strains from Streptomyces termitum

Section

Streptomyces termitum L.C. 620 is a spore-forming bacterium that was isolated from bodies of termites.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces termitum**
	Full Scientific Name (LPSN)	Streptomyces termitum Duché et al. 1951 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.071

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9263]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9263]

Culture medium growth

[Ref.: #9263]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9263]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9263]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.081
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9263]	Sample type/isolated from	bodies of termites

[Ref.: #67770]	Sample type/isolated from	Bodies of termite
* marker position based on {}

Isolation sources categories

#Host

#Other

#Decomposing animal

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9263]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces termitum gene for 16S rRNA, partial sequence	AB122742	564	GenBank ENA	67368 tax ID	*
[Ref.: #20218]	Streptomyces termitum gene for 16S ribosomal RNA, partial sequence, strain: JCM 4518	D44206	120	GenBank ENA	67368 tax ID	*
[Ref.: #20218]	Streptomyces termitum gene for 16S rRNA, partial sequence, strain: NBRC 13087	AB184302	1473	GenBank ENA	67368 tax ID	*
[Ref.: #20218]	Streptomyces termitum strain NRRL B-3804 16S ribosomal RNA gene, partial sequence	EF178672	1420	GenBank ENA	67368 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces termitum JCM 4518	GCA_014650175	contig	GenBank ENA	67368 tax ID	*
[Ref.: #66792]	Streptomyces termitum strain JCM 4518	67368.3	wgs	PATRIC	67368 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces termitum strain JCM 4518 PATRIC: 67368.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces termitum strain JCM 4518 PATRIC: 67368.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.071	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.31	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.081	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.417	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.941	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.094	no

Availability in culture collections External links

[Ref.: #9263]

Culture collection no.

DSM 40329, ATCC 25499, CBS 959.69, IFO 13087, ISP 5329, NBRC 13087, RIA 1279, JCM 4518, BCRC 12592, CGMCC 4.1781, IMET 43127, NCIMB 9980, NRRL B-3804

[Ref.: #85113]

SI-ID 45760

References

#9263

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40329

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85113

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45760.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces termitum strain JCM 4518

Streptomyces termitum strain JCM 4518

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