Strain identifier
BacDive ID: 16040
Type strain: 
Species: Streptomyces termitum
Strain Designation: L.C. 620
Strain history: KCC S-0518 <-- IFO 13087 <-- SAJ <-- ISP 5329 <-- LCP 620.
NCBI tax ID(s): 67368 (species)
version 8.1 (current version)
General
@ref: 9263
BacDive-ID: 16040
DSM-Number: 40329
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces termitum L.C. 620 is a spore-forming, mesophilic bacterium that was isolated from bodies of termites.
NCBI tax id
- NCBI tax id: 67368
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9263 | <- E.B. Shirling, ISP <- J. Nicot, L.C. 620 |
| 67770 | KCC S-0518 <-- IFO 13087 <-- SAJ <-- ISP 5329 <-- LCP 620. |
doi: 10.13145/bacdive16040.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces termitum
- full scientific name: Streptomyces termitum Duché et al. 1951 (Approved Lists 1980)
@ref: 9263
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces termitum
full scientific name: Streptomyces termitum Duché et al. 1951
strain designation: L.C. 620
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.933 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 9263
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9263 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 9263 | bodies of termites |
| 67770 | Bodies of termite |
isolation source categories
- Cat1: #Host
- Cat2: #Other
- Cat3: #Decomposing animal
Safety information
risk assessment
- @ref: 9263
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces termitum gene for 16S rRNA, partial sequence | AB122742 | 564 | ena | 67368 |
| 20218 | Streptomyces termitum gene for 16S ribosomal RNA, partial sequence, strain: JCM 4518 | D44206 | 120 | ena | 67368 |
| 20218 | Streptomyces termitum gene for 16S rRNA, partial sequence, strain: NBRC 13087 | AB184302 | 1473 | ena | 67368 |
| 20218 | Streptomyces termitum strain NRRL B-3804 16S ribosomal RNA gene, partial sequence | EF178672 | 1420 | ena | 67368 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces termitum JCM 4518 | GCA_014650175 | contig | ncbi | 67368 |
| 66792 | Streptomyces termitum strain JCM 4518 | 67368.3 | wgs | patric | 67368 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 88.191 | no |
| anaerobic | no | 99.201 | no |
| halophile | no | 93.72 | no |
| spore-forming | yes | 90.946 | no |
| glucose-util | yes | 90.682 | no |
| thermophile | no | 98.253 | yes |
| flagellated | no | 97.692 | no |
| aerobic | yes | 89.372 | no |
| glucose-ferment | no | 84.912 | no |
| motile | no | 95.234 | no |
External links
@ref: 9263
culture collection no.: DSM 40329, ATCC 25499, CBS 959.69, IFO 13087, ISP 5329, NBRC 13087, RIA 1279, JCM 4518, BCRC 12592, CGMCC 4.1781, IMET 43127, NCIMB 9980, NRRL B-3804
straininfo link
- @ref: 85113
- straininfo: 45760
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9263 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40329) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40329 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 85113 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45760.1 | StrainInfo: A central database for resolving microbial strain identifiers |