Strain identifier

BacDive ID: 16040

Type strain: Yes

Species: Streptomyces termitum

Strain Designation: L.C. 620

Strain history: KCC S-0518 <-- IFO 13087 <-- SAJ <-- ISP 5329 <-- LCP 620.

NCBI tax ID(s): 67368 (species)

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General

@ref: 9263

BacDive-ID: 16040

DSM-Number: 40329

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Streptomyces termitum L.C. 620 is a spore-forming bacterium that was isolated from bodies of termites.

NCBI tax id

  • NCBI tax id: 67368
  • Matching level: species

strain history

@refhistory
9263<- E.B. Shirling, ISP <- J. Nicot, L.C. 620
67770KCC S-0518 <-- IFO 13087 <-- SAJ <-- ISP 5329 <-- LCP 620.

doi: 10.13145/bacdive16040.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces termitum
  • full scientific name: Streptomyces termitum Duché et al. 1951 (Approved Lists 1980)

@ref: 9263

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces termitum

full scientific name: Streptomyces termitum Duché et al. 1951

strain designation: L.C. 620

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 90.071

Culture and growth conditions

culture medium

  • @ref: 9263
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
9263positivegrowth28
67770positivegrowth28

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes90.081
69481yes100

Isolation, sampling and environmental information

isolation

@refsample type
9263bodies of termites
67770Bodies of termite

isolation source categories

  • Cat1: #Host
  • Cat2: #Other
  • Cat3: #Decomposing animal

Safety information

risk assessment

  • @ref: 9263
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces termitum gene for 16S rRNA, partial sequenceAB122742564nuccore67368
20218Streptomyces termitum gene for 16S ribosomal RNA, partial sequence, strain: JCM 4518D44206120nuccore67368
20218Streptomyces termitum gene for 16S rRNA, partial sequence, strain: NBRC 13087AB1843021473nuccore67368
20218Streptomyces termitum strain NRRL B-3804 16S ribosomal RNA gene, partial sequenceEF1786721420nuccore67368

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces termitum JCM 4518GCA_014650175contigncbi67368
66792Streptomyces termitum strain JCM 451867368.3wgspatric67368

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes90.071no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.31no
69480spore-formingspore-formingAbility to form endo- or exosporesyes90.081no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes82.417no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.941yes
69480flagellatedmotile2+Ability to perform flagellated movementno85.094no

External links

@ref: 9263

culture collection no.: DSM 40329, ATCC 25499, CBS 959.69, IFO 13087, ISP 5329, NBRC 13087, RIA 1279, JCM 4518, BCRC 12592, CGMCC 4.1781, IMET 43127, NCIMB 9980, NRRL B-3804

straininfo link

  • @ref: 85113
  • straininfo: 45760

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9263Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40329)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40329
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85113Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45760.1StrainInfo: A central database for resolving microbial strain identifiers