Anaerococcus porci (DSM 101005, WCA-380-WT-2B, JCM 34364)

Name: Anaerococcus porci (DSM 101005, WCA-380-WT-2B, JCM 34364)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159474

Type strain

Strain Designation WCA-380-WT-2B

Culture col. no. DSM 101005 WCA-380-WT-2B JCM 34364

NCBI tax ID(s) 2652269

Special Collections DSMZ JCM Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-2B JCM <-- B. Abt; DSMZ, Germany; DSM 101005 (=WCA-380-WT-2B) <-- T. Clavel; RWTH Aachen, Germany.

Links

Anaerococcus porci WCA-380-WT-2B is a bacterium that was isolated from feces; pig, 8 weeks old, wild type.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399494

JCM 34364,DSM 101005

@ref 20215

Last LPSN update 2026-05-29 08:44:12

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Peptoniphilaceae

Genus Anaerococcus

Species Anaerococcus porci

Full scientific name Anaerococcus porci Wylensek et al. 2021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66297	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66297	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	90.441
125439	obligate anaerobe	96.042

Spore formation

@ref	Spore formation	Confidence
125439		92.694

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66297	feces; pig, 8 weeks old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe	48	11 48/11
67770	Feces of a German Landrace pig	Freising	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969657v1 assembly for Anaerococcus porci WCA-380-WT-2B	contig	GCA_009696575	2606621.3	2894736952	2652269	67.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66297	Anaerococcus porci strain WCA-380-WT-2B 16S ribosomal RNA gene, partial sequence	MN537453	1480		2652269

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969657v1 assembly for Anaerococcus porci WCA-380-WT-2B
BV-BRC: 2606621.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	96.04	no
125439	motility	BacteriaNetⓘ	no	61.44	no
125439	gram_stain	BacteriaNetⓘ	positive	73.66	no
125439	spore_formation	BacteriaNetⓘ	no	92.69	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerococcus sp. WCA-380-WT-2B
PATRIC: 2606621.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	79.90	no
125438	anaerobic	anaerobicⓘ	yes	90.44	no
125438	spore-forming	spore-formingⓘ	no	69.22	no
125438	aerobic	aerobicⓘ	no	99.17	no
125438	thermophilic	thermophileⓘ	no	91.36	no
125438	flagellated	motile2+ⓘ	no	87.48	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66297	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101005
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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