Name: Anaerococcus porci WCA-380-WT-2B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159474

Type strain:

Species: Anaerococcus porci

Strain Designation: WCA-380-WT-2B

Culture col. no.: DSM 101005, JCM 34364

Strain history: B. Abt; DSMZ, Germany; DSM 101005 (=WCA-380-WT-2B) <-- T. Clavel; RWTH Aachen, Germany.

NCBI tax ID(s): 2652269 (species)

SI-ID 399494

DSM 101005

Special Collections

Section

Anaerococcus porci WCA-380-WT-2B is an anaerobe, Gram-positive bacterium that was isolated from feces; pig, 8 weeks old, wild type.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Anaerococcus*
	Species	**Anaerococcus porci**
	Full Scientific Name (LPSN)	Anaerococcus porci Wylensek et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66297]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #66297]

Culture medium growth

[Ref.: #66297]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66297]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66297]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %90.441

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66297]	Sample type/isolated from	feces; pig, 8 weeks old, wild type
[Ref.: #66297]	Geographic location (country and/or sea, region)	Kranzberg (Bavaria)
[Ref.: #66297]	Country	Germany
[Ref.: #66297]	Country ISO 3 Code	DEU
[Ref.: #66297]	Continent	Europe
[Ref.: #66297]	Geographic location	48.0000°/11.0000°

[Ref.: #67770]	Sample type/isolated from	Feces of a German Landrace pig
[Ref.: #67770]	Geographic location (country and/or sea, region)	Freising
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66297]	Anaerococcus porci strain WCA-380-WT-2B 16S ribosomal RNA gene, partial sequence	MN537453	1480	GenBank ENA	2652269 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerococcus porci WCA-380-WT-2B	GCA_009696575	contig	GenBank ENA	2652269 tax ID	*
[Ref.: #66792]	Anaerococcus sp. WCA-380-WT-2B	2606621.3	wgs	PATRIC	2652269 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerococcus sp. WCA-380-WT-2B PATRIC: 2606621.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	82	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerococcus sp. WCA-380-WT-2B PATRIC: 2606621.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.903	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	90.441	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	69.219	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	99.17	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.356	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.479	no

Availability in culture collections External links

[Ref.: #66297]

Culture collection no.

DSM 101005, JCM 34364

[Ref.: #111965]

SI-ID 399494

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66297

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101005

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111965

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399494.1 )

* These data were automatically processed and therefore are not curated

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Anaerococcus sp. WCA-380-WT-2B

Anaerococcus sp. WCA-380-WT-2B

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