Strain identifier
BacDive ID: 159474
Type strain: 
Species: Anaerococcus porci
Strain Designation: WCA-380-WT-2B
Strain history: B. Abt; DSMZ, Germany; DSM 101005 (=WCA-380-WT-2B) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2652269 (species)
version 9.1 (current version)
General
@ref: 66297
BacDive-ID: 159474
DSM-Number: 101005
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-positive
description: Anaerococcus porci WCA-380-WT-2B is an anaerobe, Gram-positive bacterium that was isolated from feces; pig, 8 weeks old, wild type.
NCBI tax id
- NCBI tax id: 2652269
- Matching level: species
strain history
| @ref | history |
|---|---|
| 66297 | <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-2B |
| 67770 | B. Abt; DSMZ, Germany; DSM 101005 (=WCA-380-WT-2B) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive159474.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptoniphilaceae
- genus: Anaerococcus
- species: Anaerococcus porci
- full scientific name: Anaerococcus porci Wylensek et al. 2021
@ref: 66297
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Peptoniphilaceae
genus: Anaerococcus
species: Anaerococcus porci
full scientific name: Anaerococcus porci
strain designation: WCA-380-WT-2B
type strain: yes
Culture and growth conditions
culture medium
- @ref: 66297
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 66297 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 90.441
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 66297 | feces; pig, 8 weeks old, wild type | Kranzberg (Bavaria) | Germany | DEU | Europe | 48 | 11 |
| 67770 | Feces of a German Landrace pig | Freising | Germany | DEU | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
Sequence information
16S sequences
- @ref: 66297
- description: Anaerococcus porci strain WCA-380-WT-2B 16S ribosomal RNA gene, partial sequence
- accession: MN537453
- length: 1480
- database: nuccore
- NCBI tax ID: 2652269
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerococcus porci WCA-380-WT-2B | GCA_009696575 | contig | ncbi | 2652269 |
| 66792 | Anaerococcus sp. WCA-380-WT-2B | 2606621.3 | wgs | patric | 2652269 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 82 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.903 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 90.441 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 69.219 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 99.17 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.356 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87.479 | no |
External links
@ref: 66297
culture collection no.: DSM 101005, JCM 34364
straininfo link
- @ref: 111965
- straininfo: 399494
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66297 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101005 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101005) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111965 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399494.1 |