Name: Spongiactinospora rosea LHW63015
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158470

Type strain:

Species: Spongiactinospora rosea

Strain Designation: LHW63015

Culture col. no.: DSM 106635, CCTCC AA 2018019

Strain history: <- Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Dep. Department of Pharmacy, Shanghai; LHW63015 <- L. Li

NCBI tax ID(s): 2248750 (species)

SI-ID 401934

DSM 106635

Special Collections

Section

Spongiactinospora rosea LHW63015 is a spore-forming bacterium that was isolated from marine sponge.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Spongiactinospora*
	Species	**Spongiactinospora rosea**
	Full Scientific Name (LPSN)	Spongiactinospora rosea Li et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69323]	Colony color	Clay brown (8003)
[Ref.: #69323]	Cultivation medium used	ISP 7

[Ref.: #69323]	Colony color	Clay brown (8003)
[Ref.: #69323]	Cultivation medium used	suter with tyrosine

[Ref.: #69323]	Colony color	Chocolate brown (8017), Grey brown (8029)
[Ref.: #69323]	Cultivation medium used	ISP 2

[Ref.: #69323]	Colony color	Brown beige (1001), Sand yellow (1002)
[Ref.: #69323]	Cultivation medium used	ISP 6

[Ref.: #69323]	Colony color	Ochre brown (8001)
[Ref.: #69323]	Cultivation medium used	ISP 4

[Ref.: #69323]	Colony color	Ochre brown (8001)
[Ref.: #69323]	Cultivation medium used	suter without tyrosine

[Ref.: #69323]	Colony color	Ochre brown (8001), Clay brown (8003)
[Ref.: #69323]	Cultivation medium used	ISP 5

[Ref.: #69323]	Colony color	Ochre brown (8001), Green brown (8000)
[Ref.: #69323]	Cultivation medium used	ISP 3

[Ref.: #69323]	Pigment production	no
[Ref.: #69323]	Pigment name	Melanin
[Ref.: #69323]	Pigment production	yes
[Ref.: #69323]	Pigmentation color	Ochre yellow (1024)
[Ref.: #69323]	Pigment name	soluble pigment

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	ISP 2

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	ISP 3

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	ISP 4

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	ISP 5

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	ISP 6

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	ISP 7

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69323]	Multicellular complex forming ability	no
[Ref.: #69323]	Multicellular complex name	Aerial mycelium
[Ref.: #69323]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #65146]

Caption:

Medium 535 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #65146]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65146]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69323]		NaCl		growth	0-2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69323]	arabinose ChEBI	-	growth
[Ref.: #69323]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69323]	fructose ChEBI	+/-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69323]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69323]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69323]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69323]	raffinose ChEBI	-	growth
[Ref.: #69323]	rhamnose ChEBI	-	growth
[Ref.: #69323]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69323]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69323]	3816	-	-	-	-	-	-	-	+	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69323]	6000	not determinedn.d.	+/-	+	+/-	+/-	+	+	-	+/-	+/-	-	+/-	-	-	-	+	-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65146]	Sample type/isolated from	marine sponge
[Ref.: #65146]	Geographic location (country and/or sea, region)	Xisha Islands, Hainan Province (16° 45' N, 112° 21' E)
[Ref.: #65146]	Country	China
[Ref.: #65146]	Country ISO 3 Code	CHN
[Ref.: #65146]	Continent	Asia
[Ref.: #65146]	Geographic location	16.7500°/112.3500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65146]	Spongiactinospora rosea strain LHW63015 16S ribosomal RNA gene, partial sequence	MG200157	1452	GenBank ENA	1912062 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spongiactinospora rosea LHW63015	GCA_003315795	contig	GenBank ENA	2248750 tax ID	*
[Ref.: #66792]	Sphaerisporangium sp. LHW63015	2248750.3	wgs	PATRIC	2248750 tax ID	*

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GC-content

70.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerisporangium sp. LHW63015 PATRIC: 2248750.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerisporangium sp. LHW63015 PATRIC: 2248750.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.767	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.314	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.442	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.066	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.562	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.594	no

Availability in culture collections External links

[Ref.: #65146]

Culture collection no.

DSM 106635, CCTCC AA 2018019

[Ref.: #111267]

SI-ID 401934

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spongiactinospora rosea gen. nov., sp. nov., a new member of the family Streptosporangiaceae.	Li L, Gui YH, Xu QH, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003165	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65146

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106635

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69323

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111267

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401934.1 )

* These data were automatically processed and therefore are not curated

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Sphaerisporangium sp. LHW63015

Sphaerisporangium sp. LHW63015

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