Name: Trichococcus shcherbakoviae Art 1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158469

Type strain:

Species: Trichococcus shcherbakoviae

Strain Designation: Art 1

Culture col. no.: DSM 107162, VKM B-3260

Strain history: <- S. N. Parshina, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Art 1 <-

NCBI tax ID(s): 2094020 (species)

SI-ID 398736

DSM 107162

Special Collections

DSMZ

Section

Trichococcus shcherbakoviae Art 1 is a bacterium that was isolated from Granulated biomass of psychrophilic bioreactor.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Trichococcus*
	Species	**Trichococcus shcherbakoviae**
	Full Scientific Name (LPSN)	Trichococcus shcherbakoviae Parshina et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65145]

Culture medium

TREPONEMA SACCHAROPHILUM MEDIUM (DSMZ Medium 323)

[Ref.: #65145]

Culture medium growth

[Ref.: #65145]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65145]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65145]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65145]	Sample type/isolated from	Granulated biomass of psychrophilic bioreactor
[Ref.: #65145]	Geographic location (country and/or sea, region)	Wageningen
[Ref.: #65145]	Country	Netherlands
[Ref.: #65145]	Country ISO 3 Code	NLD
[Ref.: #65145]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LS451231 (>99% sequence identity) for Trichococcus from Microbeatlas

Aquatic Samples	19650
Soil Samples	4890
Animal Samples	13208
Plant Samples	929
Total Samples	38677

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65145]	Trichococcus sp. ART1 partial 16S rRNA gene, strain ART1, isolate ART1	LS451231	1496	GenBank ENA	2094020 tax ID

[Ref.: #65145]

GC-content

46.7 mol%

Availability in culture collections External links

[Ref.: #65145]

Culture collection no.

DSM 107162, VKM B-3260

[Ref.: #111266]

SI-ID 398736

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Trichococcus shcherbakoviae subsp. psychrophilus subsp. nov., a psychrotolerant facultative anaerobe isolated from a cold spring.	Zakharyuk A, Valyshev A, Plotnikov A, Kopitsyn D, Suzina N, Shcherbakova V	Int J Syst Evol Microbiol	10.1099/ijsem.0.005068	2021	*
Phylogeny	Trichococcus shcherbakoviae sp. nov., isolated from a laboratory-scale anaerobic EGSB bioreactor operated at low temperature.	Parshina SN, Strepis N, Aalvink S, Nozhevnikova AN, Stams AJM, Sousa DZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003193	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65145

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107162

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111266

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398736.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Trichococcus shcherbakoviae in external resources:
SILVA
BRENDA
PANGAEA
GBIF