Archive BacDiveID:10.13145/bacdive158469.20240510.9

Strain identifier

BacDive ID: 158469

Type strain:

Species: Trichococcus shcherbakoviae

Strain Designation: Art 1

Strain history: <- S. N. Parshina, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Art 1 <-

NCBI tax ID(s): 2094020 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 65145

BacDive-ID: 158469

DSM-Number: 107162

keywords: 16S sequence, Bacteria

description: Trichococcus shcherbakoviae Art 1 is a bacterium that was isolated from Granulated biomass of psychrophilic bioreactor.

NCBI tax id

NCBI tax id: 2094020
Matching level: species

strain history

@ref: 65145
history: <- S. N. Parshina, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Art 1 <-

doi: 10.13145/bacdive158469.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Lactobacillales
family: Carnobacteriaceae
genus: Trichococcus
species: Trichococcus shcherbakoviae
full scientific name: Trichococcus shcherbakoviae Parshina et al. 2019

@ref: 65145

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Trichococcus

species: Trichococcus shcherbakoviae

full scientific name: Trichococcus shcherbakoviae Parshina et al. 2019

strain designation: Art 1

type strain: yes

Culture and growth conditions

culture medium

@ref: 65145
name: TREPONEMA SACCHAROPHILUM MEDIUM (DSMZ Medium 323)
growth: yes
link: https://mediadive.dsmz.de/medium/323
composition: Name: TREPONEMA SACCHAROPHILUM MEDIUM (DSMZ Medium 323) Composition: Agar 12.0 g/l Na2CO3 2.5 g/l D-Glucose 2.0 g/l Trypticase peptone 2.0 g/l Yeast extract 2.0 g/l L-Cysteine HCl x H2O 1.0 g/l (NH4)2SO4 0.9 g/l NaCl 0.9 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l MgSO4 x 7 H2O 0.19 g/l CaCl2 x 2 H2O 0.12 g/l Sodium resazurin 0.0005 g/l n-Butyric acid iso-Butyric acid DL-2-Methylbutyric acid n-Valeric acid iso-Valeric acid Distilled water

culture temp

@ref: 65145
growth: positive
type: growth
temperature: 28

Isolation, sampling and environmental information

isolation

@ref: 65145
sample type: Granulated biomass of psychrophilic bioreactor
geographic location: Wageningen
country: Netherlands
origin.country: NLD
continent: Europe

isolation source categories

Cat1	Cat2
#Engineered	#Bioreactor
#Condition	#Psychrophilic (<10°C)

taxonmaps

@ref: 69479
File name: preview.99_24449.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_12252;97_14862;98_18388;99_24449&stattab=map
Last taxonomy: Trichococcus
16S sequence: LS451231
Sequence Identity:
Total samples: 38677
soil counts: 4890
aquatic counts: 19650
animal counts: 13208
plant counts: 929

Sequence information

16S sequences

@ref: 65145
description: Trichococcus sp. ART1 partial 16S rRNA gene, strain ART1, isolate ART1
accession: LS451231
length: 1496
database: nuccore
NCBI tax ID: 2094020

GC content

@ref: 65145
GC-content: 46.7

External links

@ref: 65145

culture collection no.: DSM 107162, VKM B-3260

straininfo link

@ref: 111266
straininfo: 398736

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	30605071	Trichococcus shcherbakoviae sp. nov., isolated from a laboratory-scale anaerobic EGSB bioreactor operated at low temperature.	Parshina SN, Strepis N, Aalvink S, Nozhevnikova AN, Stams AJM, Sousa DZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003193	2019	Bacterial Typing Techniques, Base Composition, Bioreactors/microbiology, Carnobacteriaceae/classification/isolation & purification, Cold Temperature, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Transcriptome
Phylogeny	34694985	Trichococcus shcherbakoviae subsp. psychrophilus subsp. nov., a psychrotolerant facultative anaerobe isolated from a cold spring.	Zakharyuk A, Valyshev A, Plotnikov A, Kopitsyn D, Suzina N, Shcherbakova V	Int J Syst Evol Microbiol	10.1099/ijsem.0.005068	2021	Bacterial Typing Techniques, Base Composition, Carnobacteriaceae/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Natural Springs/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
65145	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-107162	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107162)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
111266	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID398736.1