Name: Microbacterium ureisolvens DSM 103157
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158468

Type strain:

Species: Microbacterium ureisolvens

Culture col. no.: DSM 103157, KCTC 39802, CFH S00084

Strain history: <- Guo-xing Nie, Henan normal Univ.

NCBI tax ID(s): 2781186 (species)

SI-ID 401834

DSM 103157

Special Collections

Section

Microbacterium ureisolvens DSM 103157 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from From sediment of Yellow river.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium ureisolvens**
	Full Scientific Name (LPSN)	Microbacterium ureisolvens Cheng et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67812]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.022

[Ref.: #67812]	Cell length	1.28-2.42 µm

[Ref.: #67812]	Cell width	0.35-0.37 µm

[Ref.: #67812]	Cell shape	rod-shaped

[Ref.: #67812]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

[Ref.: #67812]	Colony color	pale yellow to bright yellow
[Ref.: #67812]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65144]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #65144]

Culture medium growth

[Ref.: #65144]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65144]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65144]	growth	28 °C
[Ref.: #67771]	growth	28 °C
[Ref.: #67812]	growth	15-37 °C
[Ref.: #67812]	optimum	25-37 °C

	pH	Kind of pH		pH
[Ref.: #67812]			optimum	7
[Ref.: #67812]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #67812]	Oxygen tolerance	aerobe

[Ref.: #67812]	Type of spore	endospore
[Ref.: #67812]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67812]		NaCl		growth	0-4	%
[Ref.: #67812]		NaCl		optimum	0-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67812]	(S)-lactate ChEBI	+	assimilation
[Ref.: #67812]	2-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #67812]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #67812]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #67812]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #67812]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	assimilation
[Ref.: #67812]	acetate ChEBI	+	assimilation
[Ref.: #67812]	acetoacetate ChEBI	+	assimilation
[Ref.: #67812]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #67812]	alpha-lactose ChEBI	+	assimilation
[Ref.: #67812]	bromosuccinate ChEBI	+	assimilation
[Ref.: #67812]	cellobiose ChEBI	+	assimilation
[Ref.: #67812]	cellulose ChEBI	-	hydrolysis
[Ref.: #67812]	D-fructose ChEBI	+	assimilation
[Ref.: #67812]	D-galactose ChEBI	+	assimilation
[Ref.: #67812]	D-gluconate ChEBI	+	assimilation
[Ref.: #67812]	D-malate ChEBI	+	assimilation
[Ref.: #67812]	D-mannitol ChEBI	+	assimilation
[Ref.: #67812]	D-mannose ChEBI	+	assimilation
[Ref.: #67812]	D-trehalose ChEBI	+	assimilation
[Ref.: #67812]	D-xylose ChEBI	+	assimilation
[Ref.: #67812]	dextrin ChEBI	+	assimilation
[Ref.: #67812]	esculin ChEBI	+	assimilation
[Ref.: #67812]	formate ChEBI	+	assimilation
[Ref.: #67812]	gelatin ChEBI	+	hydrolysis
[Ref.: #67812]	gentiobiose ChEBI	+	assimilation
[Ref.: #67812]	glycine-proline ChEBI	+	nitrogen source
[Ref.: #67812]	glycogen ChEBI	+	assimilation
[Ref.: #67812]	L-alanine ChEBI	+	nitrogen source
[Ref.: #67812]	L-arabinose ChEBI	+	assimilation
[Ref.: #67812]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #67812]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #67812]	L-malate ChEBI	+	assimilation
[Ref.: #67812]	L-rhamnose ChEBI	+	assimilation
[Ref.: #67812]	L-serine ChEBI	+	nitrogen source
[Ref.: #67812]	L-threonine ChEBI	+	nitrogen source
[Ref.: #67812]	maltose ChEBI	+	assimilation
[Ref.: #67812]	melezitose ChEBI	+	assimilation
[Ref.: #67812]	melibiose ChEBI	+	assimilation
[Ref.: #67812]	methyl beta-D-glucopyranoside ChEBI	+	assimilation
[Ref.: #67812]	methyl beta-D-xylopyranoside ChEBI	+	assimilation
[Ref.: #67812]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #67812]	nitrate ChEBI	+	reduction
[Ref.: #67812]	propionate ChEBI	+	assimilation
[Ref.: #67812]	quinate ChEBI	+	assimilation
[Ref.: #67812]	raffinose ChEBI	+	assimilation
[Ref.: #67812]	salicin ChEBI	+	assimilation
[Ref.: #67812]	stachyose ChEBI	+	assimilation
[Ref.: #67812]	starch ChEBI	+	hydrolysis
[Ref.: #67812]	starch ChEBI	+	assimilation
[Ref.: #67812]	sucrose ChEBI	+	assimilation
[Ref.: #67812]	turanose ChEBI	+	assimilation
[Ref.: #67812]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67812]	tween 40 ChEBI	-	hydrolysis
[Ref.: #67812]	tween 60 ChEBI	-	hydrolysis
[Ref.: #67812]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67812]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67812]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67812]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67812]	alpha-fucosidase	+	3.2.1.51
[Ref.: #67812]	alpha-galactosidase	+	3.2.1.22
[Ref.: #67812]	alpha-glucosidase	+	3.2.1.20
[Ref.: #67812]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67812]	beta-galactosidase	+	3.2.1.23
[Ref.: #67812]	beta-glucosidase	+	3.2.1.21
[Ref.: #67812]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67812]	catalase	+	1.11.1.6
[Ref.: #67812]	cystine arylamidase	+	3.4.11.3
[Ref.: #67812]	cytochrome oxidase	-	1.9.3.1
[Ref.: #67812]	esterase (C 4)	+
[Ref.: #67812]	esterase Lipase (C 8)	+
[Ref.: #67812]	leucine arylamidase	+	3.4.11.1
[Ref.: #67812]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #67812]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67812]	trypsin	+	3.4.21.4
[Ref.: #67812]	urease	+	3.5.1.5
[Ref.: #67812]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67812]

Fatty acid	Percentage
C15:0 anteiso	36
C17:0 anteiso	25.6
C16:0 iso	13.2
C15:0 iso	6.3
C17:0 iso	5.2
C18:1 w9c	3.7
C18:0 10-methyl TBSA	2.6
C16:0	1.8
C18:0	1.5
C18:0 iso	1.1
C14:0 iso	0.7
C16:0 2OH	0.6
C17:0	0.5
C17:1 w5c	0.2
C19:0 anteiso	0.2
C19:0 cyclo w10c and/or 19w6	0.1
C16:1 w6c and/or C16:1 w7c	0.1
C17:1 w8c	0.1
C17:0 2OH	0.1
C16:1 w9c	0.1
C18:0-2-OH	0.1
C17:0 3OH	0.1
C18:1 w7c	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From sediment of Yellow river
[Ref.: #67771]	Geographic location (country and/or sea, region)	Henan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #65144]	Sample type/isolated from	sediment
[Ref.: #65144]	Geographic location (country and/or sea, region)	Henan Province, Yellow River
[Ref.: #65144]	Country	China
[Ref.: #65144]	Country ISO 3 Code	CHN
[Ref.: #65144]	Continent	Asia

[Ref.: #67812]	Sample type/isolated from	sediment sample
[Ref.: #67812]	Geographic location (country and/or sea, region)	Yellow River in Henan Province
[Ref.: #67812]	Country	China
[Ref.: #67812]	Country ISO 3 Code	CHN
[Ref.: #67812]	Continent	Asia
[Ref.: #67812]	Enrichment culture	ISP2
[Ref.: #67812]	Enrichment culture duration	2 weeks
[Ref.: #67812]	Enrichment culture temperature	28 ̊C
[Ref.: #67812]	Isolation/enrichment procedure	standard dilution plating method
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65144]	Microbacterium ureisolvens 16S ribosomal RNA gene, partial sequence	KY039334	1458	GenBank ENA	51671 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67812]	Microbacterium sp. KCTC 39802	GCA_003121305	contig	GenBank ENA	2183895 tax ID
[Ref.: #66792]	Microbacterium sp. KCTC 39802	2183895.3	wgs	PATRIC	2183895 tax ID	*
[Ref.: #66792]	Microbacterium sp. KCTC 39802	2866300312	draft	JGI IMG/M	2183895 tax ID	*

[Ref.: #65144]	GC-content	70.5 mol%
[Ref.: #67812]	GC-content	70.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium sp. KCTC 39802 PATRIC: 2183895.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.022	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.116	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.569	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.577	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.304	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	yes

Availability in culture collections External links

[Ref.: #65144]

Culture collection no.

DSM 103157, KCTC 39802, CFH S00084

[Ref.: #111265]

SI-ID 401834

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria.	Xie F, Niu S, Lin X, Pei S, Jiang L, Tian Y, Zhang G	J Microbiol	10.1007/s12275-021-1186-5	2021	*
Phylogeny	Microbacterium ureisolvens sp. nov., isolated from a Yellow River sample.	Cheng LJ, Ming H, Zhao ZL, Ji WL, Zhang LY, Li LY, Meng XL, Li M, Niu MM, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003203	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65144

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103157

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#67812

Li-jiao Cheng, Hong Ming, Zhuo-Li Zhao, Wei-Li Ji, Ling-Yu Zhang, Lan-yu Li, Xiao-lin Meng, Meng Li, Ming-ming Niu, Guo-Xing Nie: Microbacterium ureisolvens sp. nov., isolated from a Yellow River sample. IJSEM 69: 560 - 566 2019 ( DOI 10.1099/ijsem.0.003203 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111265

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401834.1 )

* These data were automatically processed and therefore are not curated

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Microbacterium sp. KCTC 39802

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