Name: Kocuria tytonis 442
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158467

Type strain:

Species: Kocuria tytonis

Strain Designation: 442

Culture col. no.: DSM 104130, LMG 29944

Strain history: <- M. Santhosh Braun, Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg, Germany; 442

NCBI tax ID(s): 2054280 (species)

SI-ID 400076

DSM 104130

Section

Kocuria tytonis 442 is a mesophilic bacterium that was isolated from Preen gland of Tyto furcata.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria tytonis**
	Full Scientific Name (LPSN)	Kocuria tytonis Braun et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.255

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65143]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #65143]

Culture medium growth

[Ref.: #65143]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65143]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65143]			growth	28 °C

[Ref.: #65143]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65143]	Sample type/isolated from	Preen gland of Tyto furcata
[Ref.: #65143]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #65143]	Country	Germany
[Ref.: #65143]	Country ISO 3 Code	DEU
[Ref.: #65143]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body-Site	#Organ	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG547562 (>99% sequence identity) for Kocuria from Microbeatlas

Aquatic Samples	947
Soil Samples	468
Animal Samples	9694
Plant Samples	153
Total Samples	11262

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65143]	Kocuria sp. 442 16S ribosomal RNA gene, partial sequence	MG547562	1415	ENA	2054280 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kocuria tytonis 442	GCA_003226895	contig	GenBank	2054280 tax ID	*
[Ref.: #66792]	Kocuria sp. 442	2054280.3	wgs	PATRIC	2054280 tax ID	*
[Ref.: #66792]	Kocuria tytonis 442	2847138596	draft	JGI IMG/M	2054280 tax ID	*

[Ref.: #65143]

GC-content

70.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kocuria sp. 442 PATRIC: 2054280.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kocuria sp. 442 PATRIC: 2054280.3
[Ref.: #69480]	motile	no	94.024	no
[Ref.: #69480]	gram-positive	yes	94.572	no
[Ref.: #69480]	anaerobic	no	99.473	no
[Ref.: #69480]	aerobic	yes	88.556	no
[Ref.: #69480]	halophile	yes	72.777	no
[Ref.: #69480]	spore-forming	no	94.391	no
[Ref.: #69480]	glucose-util	yes	90.506	no
[Ref.: #69480]	flagellated	no	97.517	no
[Ref.: #69480]	thermophile	no	94.885	yes
[Ref.: #69480]	glucose-ferment	no	78.274	no

Availability in culture collections External links

[Ref.: #65143]

Culture collection no.

DSM 104130, LMG 29944

[Ref.: #111264]

SI-ID 400076

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria tytonis sp. nov., isolated from the uropygial gland of an American barn owl (Tyto furcata).	Braun MS, Wang E, Zimmermann S, Wagner H, Wink M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003170	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65143

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104130

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111264

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400076.1 )

* These data were automatically processed and therefore are not curated

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Kocuria sp. 442

Kocuria sp. 442

Change proposal

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