Strain identifier

BacDive ID: 158470

Type strain: No

Species: Spongiactinospora rosea

Strain Designation: LHW63015

Strain history: <- Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Dep. Department of Pharmacy, Shanghai; LHW63015 <- L. Li

NCBI tax ID(s): 2248750 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 9.1 (current version)

General

@ref: 65146

BacDive-ID: 158470

DSM-Number: 106635

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Spongiactinospora rosea LHW63015 is a spore-forming bacterium that was isolated from marine sponge.

NCBI tax id

  • NCBI tax id: 2248750
  • Matching level: species

strain history

  • @ref: 65146
  • history: <- Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Dep. Department of Pharmacy, Shanghai; LHW63015 <- L. Li

doi: 10.13145/bacdive158470.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Spongiactinospora
  • species: Spongiactinospora rosea
  • full scientific name: Spongiactinospora rosea Li et al. 2019

@ref: 65146

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Spongiactinospora

species: Spongiactinospora rosea

full scientific name: Spongiactinospora rosea Li et al. 2019

strain designation: LHW63015

type strain: no

Morphology

colony morphology

@refcolony colormedium used
69323Clay brown (8003)ISP 7
69323Clay brown (8003)suter with tyrosine
69323Chocolate brown (8017), Grey brown (8029)ISP 2
69323Brown beige (1001), Sand yellow (1002)ISP 6
69323Ochre brown (8001)ISP 4
69323Ochre brown (8001)suter without tyrosine
69323Ochre brown (8001), Clay brown (8003)ISP 5
69323Ochre brown (8001), Green brown (8000)ISP 3

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69323noAerial myceliumISP 2
69323noAerial myceliumISP 3
69323noAerial myceliumISP 4
69323noAerial myceliumISP 5
69323noAerial myceliumISP 6
69323noAerial myceliumISP 7
69323noAerial myceliumsuter with tyrosine
69323noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69323noMelanin
69323yessoluble pigmentOchre yellow (1024)

multimedia

  • @ref: 65146
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106635.jpg
  • caption: Medium 535 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 65146
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 65146
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 100

halophily

  • @ref: 69323
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6932322599arabinose-growth
6932362968cellulose-growth
6932328757fructose+/-growth
6932317234glucose+growth
6932317268inositol-growth
6932337684mannose-growth
6932316634raffinose-growth
6932326546rhamnose-growth
6932317992sucrose+/-growth
6932318222xylose-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382esterase (C 4)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382acid phosphatase-3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69323-------+-++--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69323+/-++/-+/-++-+/-+/--+/----+-++/--

Isolation, sampling and environmental information

isolation

  • @ref: 65146
  • sample type: marine sponge
  • geographic location: Xisha Islands, Hainan Province (16° 45' N, 112° 21' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 16.75
  • longitude: 112.35

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Porifera (Sponges)

Sequence information

16S sequences

  • @ref: 65146
  • description: Spongiactinospora rosea strain LHW63015 16S ribosomal RNA gene, partial sequence
  • accession: MG200157
  • length: 1452
  • database: nuccore
  • NCBI tax ID: 1912062

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Spongiactinospora rosea LHW63015GCA_003315795contigncbi2248750
66792Sphaerisporangium sp. LHW630152248750.3wgspatric2248750

GC content

  • @ref: 65146
  • GC-content: 70.8
  • method: sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes86.767no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.314no
69480spore-formingspore-formingAbility to form endo- or exosporesyes86.442no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.066no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno90.562yes
69480flagellatedmotile2+Ability to perform flagellated movementno86.594no

External links

@ref: 65146

culture collection no.: DSM 106635, CCTCC AA 2018019

straininfo link

  • @ref: 111267
  • straininfo: 401934

literature

  • topic: Phylogeny
  • Pubmed-ID: 30543322
  • title: Spongiactinospora rosea gen. nov., sp. nov., a new member of the family Streptosporangiaceae.
  • authors: Li L, Gui YH, Xu QH, Lin HW, Lu YH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003165
  • year: 2018
  • mesh: Actinobacteria/*cytology/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65146Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106635Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106635)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69323Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%20106635.pdf
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111267Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401934.1