Name: Salimicrobium salexigens 29CMI
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1552

Type strain:

Species: Salimicrobium salexigens

Strain Designation: 29CMI

Culture col. no.: DSM 22782, CECT 7568, JCM 16414, LMG 25386

Strain history: C. Sánchez-Porro 29CMI.

NCBI tax ID(s): 908941 (species)

SI-ID 363727

LMG 25386, CECT 7568, JCM 16414, DSM 22782

Special Collections

DSMZ
JCM

Other strains from Salimicrobium salexigens

Section

Salimicrobium salexigens 29CMI is a Gram-positive bacterium that was isolated from salted cowskin obtained from Australia.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Salimicrobium*
	Species	**Salimicrobium salexigens**
	Full Scientific Name (LPSN)	Salimicrobium salexigens de la Haba et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16515]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16515]

Culture medium growth

[Ref.: #16515]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16515]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16515]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16515]	Sample type/isolated from	salted cowskin obtained from Australia
[Ref.: #16515]	Geographic location (country and/or sea, region)	Istanbul
[Ref.: #16515]	Country	Turkey
[Ref.: #16515]	Country ISO 3 Code	TUR

[Ref.: #67770]	Sample type/isolated from	Salted hides from Australia
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Skin, Nail, Hair
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16515]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16515]	Salimicrobium salexigens 16S rRNA gene, type strain 29CMIT	FR714935	1481	GenBank ENA	908941 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salimicrobium salexigens DSM 22782	GCA_900156705	scaffold	GenBank ENA	908941 tax ID
[Ref.: #66792]	Salimicrobium salexigens strain DSM 22782	908941.3	wgs	PATRIC	908941 tax ID	*
[Ref.: #66792]	Salimicrobium salexigens DSM 22782	2681813520	draft	JGI IMG/M	908941 tax ID	*

[Ref.: #16515]

GC-content

50.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salimicrobium salexigens DSM 22782 NCBI: GCA_900156705.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	54	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salimicrobium salexigens strain DSM 22782 PATRIC: 908941.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.708	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.969	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.306	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	51.206	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	86.081	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	65.184	no

Availability in culture collections External links

[Ref.: #16515]

Culture collection no.

DSM 22782, CECT 7568, JCM 16414, LMG 25386

[Ref.: #71197]

SI-ID 363727

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salimicrobium humidisoli sp. nov., Isolated from Saline-Alkaline Soil.	Xiong Q, Liu Y, Zhao J, Fang Z, Zhang G	Curr Microbiol	10.1007/s00284-021-02551-4	2021	*
Phylogeny	Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.	Choi EJ, Jin HM, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.062042-0	2014	*
Phylogeny	Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides.	de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa A	Syst Appl Microbiol	10.1016/j.syapm.2011.04.002	2011	*

References

#16515

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22782

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71197

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363727.1 )

* These data were automatically processed and therefore are not curated

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Salimicrobium salexigens DSM 22782

Salimicrobium salexigens strain DSM 22782

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