Strain identifier
BacDive ID: 1552
Type strain: 
Species: Salimicrobium salexigens
Strain Designation: 29CMI
Strain history: C. Sánchez-Porro 29CMI.
NCBI tax ID(s): 908941 (species)
version 9.3 (current version)
General
@ref: 16515
BacDive-ID: 1552
DSM-Number: 22782
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Salimicrobium salexigens 29CMI is a mesophilic bacterium that was isolated from salted cowskin obtained from Australia.
NCBI tax id
- NCBI tax id: 908941
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16515 | <- C. Sánchez-Porro, Univ. Seville, Dept. Microbiol. Parasitol., Spain; 29CMI <- P. Yilmaz |
| 67770 | C. Sánchez-Porro 29CMI. |
doi: 10.13145/bacdive1552.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Salimicrobium
- species: Salimicrobium salexigens
- full scientific name: Salimicrobium salexigens de la Haba et al. 2011
@ref: 16515
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Salimicrobium
species: Salimicrobium salexigens
full scientific name: Salimicrobium salexigens de la Haba et al. 2011
strain designation: 29CMI
type strain: yes
Culture and growth conditions
culture medium
- @ref: 16515
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 50.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16515 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 92.7
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country |
|---|---|---|---|---|
| 16515 | salted cowskin obtained from Australia | Istanbul | Turkey | TUR |
| 67770 | Salted hides from Australia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 16515
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16515
- description: Salimicrobium salexigens 16S rRNA gene, type strain 29CMIT
- accession: FR714935
- length: 1481
- database: nuccore
- NCBI tax ID: 908941
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salimicrobium salexigens strain DSM 22782 | 908941.3 | wgs | patric | 908941 |
| 66792 | Salimicrobium salexigens DSM 22782 | 2681813520 | draft | img | 908941 |
| 67770 | Salimicrobium salexigens DSM 22782 | GCA_900156705 | scaffold | ncbi | 908941 |
GC content
- @ref: 16515
- GC-content: 50.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.708 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.969 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.306 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 51.206 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 86.081 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 65.184 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 86.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 86.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 85.1 |
External links
@ref: 16515
culture collection no.: DSM 22782, CECT 7568, JCM 16414, LMG 25386
straininfo link
- @ref: 71197
- straininfo: 363727
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21596507 | Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides. | de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa A | Syst Appl Microbiol | 10.1016/j.syapm.2011.04.002 | 2011 | Animals, Animals, Domestic/microbiology, Australia, Bacillaceae/*classification/genetics, Base Sequence, DNA, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/chemistry/genetics, Skin/*microbiology | Genetics |
| Phylogeny | 25070217 | Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood. | Choi EJ, Jin HM, Kim KH, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijs.0.062042-0 | 2014 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistry | Biotechnology |
| Phylogeny | 34181047 | Salimicrobium humidisoli sp. nov., Isolated from Saline-Alkaline Soil. | Xiong Q, Liu Y, Zhao J, Fang Z, Zhang G | Curr Microbiol | 10.1007/s00284-021-02551-4 | 2021 | Bacillaceae, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16515 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22782) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22782 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 71197 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID363727.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |