Strain identifier

BacDive ID: 1552

Type strain: Yes

Species: Salimicrobium salexigens

Strain Designation: 29CMI

Strain history: C. Sánchez-Porro 29CMI.

NCBI tax ID(s): 908941 (species)

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General

@ref: 16515

BacDive-ID: 1552

DSM-Number: 22782

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Salimicrobium salexigens 29CMI is a mesophilic, Gram-positive bacterium that was isolated from salted cowskin obtained from Australia.

NCBI tax id

  • NCBI tax id: 908941
  • Matching level: species

strain history

@refhistory
16515<- C. Sánchez-Porro, Univ. Seville, Dept. Microbiol. Parasitol., Spain; 29CMI <- P. Yilmaz
67770C. Sánchez-Porro 29CMI.

doi: 10.13145/bacdive1552.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Salimicrobium
  • species: Salimicrobium salexigens
  • full scientific name: Salimicrobium salexigens de la Haba et al. 2011

@ref: 16515

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Salimicrobium

species: Salimicrobium salexigens

full scientific name: Salimicrobium salexigens de la Haba et al. 2011

strain designation: 29CMI

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 16515
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 50.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16515positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.805

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.country
16515salted cowskin obtained from AustraliaIstanbulTurkeyTUR
67770Salted hides from Australia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Skin, Nail, Hair
#Condition#Saline

Safety information

risk assessment

  • @ref: 16515
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16515
  • description: Salimicrobium salexigens 16S rRNA gene, type strain 29CMIT
  • accession: FR714935
  • length: 1481
  • database: ena
  • NCBI tax ID: 908941

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salimicrobium salexigens strain DSM 22782908941.3wgspatric908941
66792Salimicrobium salexigens DSM 227822681813520draftimg908941
67770Salimicrobium salexigens DSM 22782GCA_900156705scaffoldncbi908941

GC content

  • @ref: 16515
  • GC-content: 50.7
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes54no
motileyes78.995no
flagellatedyes52.177no
gram-positiveyes93.565no
anaerobicno99.149no
halophileyes96.271no
spore-formingno57.749no
thermophileno92.178yes
glucose-utilyes88.713no
aerobicyes92.189no
glucose-fermentno82.299no

External links

@ref: 16515

culture collection no.: DSM 22782, CECT 7568, JCM 16414, LMG 25386

straininfo link

  • @ref: 71197
  • straininfo: 363727

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21596507Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides.de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa ASyst Appl Microbiol10.1016/j.syapm.2011.04.0022011Animals, Animals, Domestic/microbiology, Australia, Bacillaceae/*classification/genetics, Base Sequence, DNA, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/chemistry/genetics, Skin/*microbiologyGenetics
Phylogeny25070217Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.Choi EJ, Jin HM, Kim KH, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.062042-02014Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistryBiotechnology
Phylogeny34181047Salimicrobium humidisoli sp. nov., Isolated from Saline-Alkaline Soil.Xiong Q, Liu Y, Zhao J, Fang Z, Zhang GCurr Microbiol10.1007/s00284-021-02551-42021Bacillaceae, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *SoilTranscriptome

Reference

@idauthorscataloguedoi/urltitle
16515Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22782)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22782
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
71197Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID363727.1StrainInfo: A central database for resolving microbial strain identifiers