Name: Streptomyces phaeofaciens DSM 40367
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15468

Type strain:

Species: Streptomyces phaeofaciens

Culture col. no.: DSM 40367, ATCC 15034, CBS 426.64, CBS 637.72, IFO 13372, ISP 5367, JCM 4125, JCM 4814, NBRC 13372, NRRL B-1516, RIA 1333, RIA 753, BCRC 16223, CBS 673.72, CGMCC 4.1984, IFM 1177, VKM Ac-1865

Strain history: KCC S-0125 <-- Y. Okami T-23 (NIHJ 226).

NCBI tax ID(s): 1306182 (strain), 68254 (species)

SI-ID 45576

ATCC 15034, NRRL B-1516, IFO 13372, DSM 40367, JCM 4125, JCM 4814, VKM Ac-1865, CBS 426.64, CBS 673.72, NBRC 13372, BCRC 16223, CCRC 16223, CGMCC 4.1984

Special Collections

DSMZ
JCM

Other strains from Streptomyces phaeofaciens

Section

Streptomyces phaeofaciens DSM 40367 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces phaeofaciens**
	Full Scientific Name (LPSN)	Streptomyces phaeofaciens Maeda et al. 1952 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9287]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9287]

Culture medium growth

[Ref.: #9287]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9287]

Culture medium composition

expand / minimize

[Ref.: #9287]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9287]

Culture medium growth

[Ref.: #9287]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9287]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %98

[Ref.: #9287]	Name of produced compound	phaeofacin (anti-fungal)
[Ref.: #67770]	Name of produced compound	Phaeofacin

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9287]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9287]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces kishiwadensis strain CGMCC 4.1984 16S ribosomal RNA gene, partial sequence	HQ244462	1387	GenBank ENA	67310 tax ID	*
[Ref.: #20218]	Streptomyces phaeofaciens gene for 16S rRNA, partial sequence	AB122721	564	GenBank ENA	1306182 tax ID	*
[Ref.: #20218]	Streptomyces phaeofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4814	D44381	120	GenBank ENA	1306182 tax ID	*
[Ref.: #20218]	Streptomyces phaeofaciens gene for 16S rRNA, partial sequence, strain: NBRC 13372	AB184360	1476	GenBank ENA	1306182 tax ID	*
[Ref.: #20218]	Streptomyces phaeofaciens strain NRRL B-1516T 16S ribosomal RNA gene, partial sequence	DQ442539	1413	GenBank ENA	1306182 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces phaeofaciens JCM 4125	GCA_014648915	scaffold	GenBank ENA	68254 tax ID	*
[Ref.: #66792]	Streptomyces phaeofaciens JCM 4814	GCA_001315485	contig	GenBank ENA	1306182 tax ID	*
[Ref.: #66792]	Streptomyces phaeofaciens JCM 4814	1306182.6	wgs	PATRIC	1306182 tax ID	*
[Ref.: #66792]	Streptomyces phaeofaciens strain JCM 4125	68254.3	wgs	PATRIC	68254 tax ID	*
[Ref.: #66792]	Streptomyces phaeofaciens JCM 4814	2734481990	draft	JGI IMG/M	1306182 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces phaeofaciens JCM 4814 PATRIC: 1306182.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces phaeofaciens JCM 4814 PATRIC: 1306182.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	80.658	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.541	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	73.193	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.968	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.107	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #9287]

Culture collection no.

DSM 40367, ATCC 15034, CBS 426.64, CBS 637.72, IFO 13372, ISP 5367, JCM 4125, JCM 4814, NBRC 13372, NRRL B-1516, RIA 1333, RIA 753, BCRC 16223, CBS 673.72, CGMCC 4.1984, IFM 1177, VKM Ac-1865

[Ref.: #84555]

SI-ID 45576

References

#9287

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40367

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84555

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45576.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces phaeofaciens JCM 4814

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