Streptomyces griseorubiginosus (DSM 40125, ATCC 23946, CBS 930.68)

Name: Streptomyces griseorubiginosus (DSM 40125, ATCC 23946, CBS 930.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15469

Type strain

Culture col. no. DSM 40125 ATCC 23946 CBS 930.68 ETH 24482 IFO 12899 17 more

NCBI tax ID(s) 67304

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- E.B. Shirling, ISP <- R. Shinobu, OEU, 146 JCM <-- KCC S-0101 <-- R. Shinobu 146.

Links

Streptomyces griseorubiginosus DSM 40125 is a bacterium of the family Streptomycetaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 216914

ATCC 23946,IFO 12899,DSM 40125,JCM 4101,CCRC 13754,IFO 3930,NRRL B-2260,JCM 4660,CBS 930.68,KCTC 9764,NBRC 12899,NBRC 3930,BCRC 13754,HAMBI 950,CGMCC 4.1977

@ref 20215

Last LPSN update 2026-05-29 08:28:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces griseorubiginosus

Full scientific name Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (3)

Streptomyces phaeoviridis
Streptomyces phaeopurpureus
"Actinomyces griseorubiginosus"

BacDive ID	Other strains from **Streptomyces griseorubiginosus** (7)	Type strain
15279	S. griseorubiginosus DSM 40469, ATCC 23627, ATCC 25459, CBS 692.69, ... (type strain)
15470	S. griseorubiginosus 503, DSM 40285, ATCC 23947, CBS 931.68, IFO ...
127966	S. griseorubiginosus SF004032,
127967	S. griseorubiginosus SF004048,
127968	S. griseorubiginosus SF002263,
127969	S. griseorubiginosus SF001074,
127970	S. griseorubiginosus SF001075,

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	98.189
125439		92.618

Multimedia

@ref:	9329
multimedia content:	DSM_40125.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40125.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9329	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9329	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.838

Spore formation

@ref	Spore formation	Confidence
125438		90.808

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9329	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM151398v1 assembly for Streptomyces griseorubiginosus DSM 40125	scaffold	GCA_001513985	67340.3	2775507092	67304	69.24

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces phaeopurpureus gene for 16S rRNA, partial sequence	AB122729	564	67340
20218	Streptomyces phaeopurpureus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4660	D44290	120	67340
20218	Streptomyces phaeopurpureus gene for 16S rRNA, partial sequence, strain: NBRC 12899	AB184229	1474	67340
20218	Streptomyces phaeopurpureus gene for 16S rRNA, partial sequence, strain: NBRC 3930	AB184813	1450	67340
20218	Streptomyces griseorubiginosus strain NRRL B-2260 16S ribosomal RNA gene, partial sequence	DQ026666	1510	67340

GC content

@ref	GC-content (mol%)	Method
9329	70.97	sequence analysis
67770	70.97	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM151398v1 assembly for Streptomyces griseorubiginosus DSM 40125
BV-BRC: 67340.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	98.19	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.84	no
125439	motility	BacteriaNetⓘ	no	92.62	no
125439	spore_formation	BacteriaNetⓘ	yes	89.18	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces phaeopurpureus strain DSM 40125
PATRIC: 67340.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.18	no
125438	anaerobic	anaerobicⓘ	no	96.49	no
125438	spore-forming	spore-formingⓘ	yes	90.81	no
125438	aerobic	aerobicⓘ	yes	88.70	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification of the peptide epimerase MslH responsible for d-amino acid introduction at the C-terminus of ribosomal peptides.	Feng Z, Ogasawara Y, Dairi T.	Chem Sci	10.1039/d0sc06308h	2020
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018

References

#9329	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40125
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces griseorubiginosus (DSM 40125, ATCC 23946, CBS 930.68)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001513985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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