Strain identifier
BacDive ID: 15468
Type strain:
Species: Streptomyces phaeofaciens
Strain history: KCC S-0125 <-- Y. Okami T-23 (NIHJ 226).
NCBI tax ID(s): 1306182 (strain), 68254 (species)
General
@ref: 9287
BacDive-ID: 15468
DSM-Number: 40367
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces phaeofaciens DSM 40367 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
68254 | species |
1306182 | strain |
strain history
@ref | history |
---|---|
9287 | <- E.B. Shirling, ISP <- CBS |
67770 | KCC S-0125 <-- Y. Okami T-23 (NIHJ 226). |
doi: 10.13145/bacdive15468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces phaeofaciens
- full scientific name: Streptomyces phaeofaciens Maeda et al. 1952 (Approved Lists 1980)
@ref: 9287
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces phaeofaciens
full scientific name: Streptomyces phaeofaciens Maeda et al. 1952
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 95.654 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9287 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9287 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9287 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 98
compound production
@ref | compound |
---|---|
9287 | phaeofacin (anti-fungal) |
67770 | Phaeofacin |
Isolation, sampling and environmental information
isolation
- @ref: 9287
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9287
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces kishiwadensis strain CGMCC 4.1984 16S ribosomal RNA gene, partial sequence | HQ244462 | 1387 | ena | 67310 |
20218 | Streptomyces phaeofaciens gene for 16S rRNA, partial sequence | AB122721 | 564 | ena | 1306182 |
20218 | Streptomyces phaeofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4814 | D44381 | 120 | ena | 1306182 |
20218 | Streptomyces phaeofaciens gene for 16S rRNA, partial sequence, strain: NBRC 13372 | AB184360 | 1476 | ena | 1306182 |
20218 | Streptomyces phaeofaciens strain NRRL B-1516T 16S ribosomal RNA gene, partial sequence | DQ442539 | 1413 | ena | 1306182 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces phaeofaciens JCM 4125 | GCA_014648915 | scaffold | ncbi | 68254 |
66792 | Streptomyces phaeofaciens JCM 4814 | GCA_001315485 | contig | ncbi | 1306182 |
66792 | Streptomyces phaeofaciens JCM 4814 | 1306182.6 | wgs | patric | 1306182 |
66792 | Streptomyces phaeofaciens strain JCM 4125 | 68254.3 | wgs | patric | 68254 |
66792 | Streptomyces phaeofaciens JCM 4814 | 2734481990 | draft | img | 1306182 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 98 | no |
motile | no | 93.644 | no |
gram-positive | yes | 88.679 | no |
anaerobic | no | 98.824 | no |
halophile | no | 94.997 | no |
spore-forming | yes | 78.214 | no |
thermophile | no | 99.027 | no |
glucose-util | yes | 85.845 | no |
aerobic | yes | 96.442 | no |
flagellated | no | 98.392 | no |
glucose-ferment | no | 94.633 | no |
External links
@ref: 9287
culture collection no.: DSM 40367, ATCC 15034, CBS 426.64, CBS 637.72, IFO 13372, ISP 5367, JCM 4125, JCM 4814, NBRC 13372, NRRL B-1516, RIA 1333, RIA 753, BCRC 16223, CBS 673.72, CGMCC 4.1984, IFM 1177, VKM Ac-1865
straininfo link
- @ref: 84555
- straininfo: 45576
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9287 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40367) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40367 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
84555 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45576.1 | StrainInfo: A central database for resolving microbial strain identifiers |