Aggregatibacter aphrophilus (CCUG 51588)

Name: Aggregatibacter aphrophilus (CCUG 51588)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 153909

Type strain

Culture col. no. CCUG 51588

NCBI tax ID(s) 732

Special Collections CCUG

Links

Aggregatibacter aphrophilus CCUG 51588 is a microaerophile bacterium that was isolated from Human dental plaque.

microaerophile genome sequence Bacteria

Name and taxonomic classification

SI-ID 302989

CCUG 51588

@ref 20215

Last LPSN update 2026-05-29 08:42:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Aggregatibacter

Species Aggregatibacter aphrophilus

Full scientific name Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006

Synonyms (2)

Haemophilus paraphrophilus
Haemophilus aphrophilus

BacDive ID	Other strains from **Aggregatibacter aphrophilus** (128)	Type strain
135780	A. aphrophilus CIP 70.73, ATCC 33389, CCUG 3715, NCTC 5906 (type strain)
134781	A. aphrophilus X100, Caraton, CIP 63.80
134962	A. aphrophilus 32.87, CIP 102789
135018	A. aphrophilus 158.87, CIP 102886
135026	A. aphrophilus 166.87, CIP 102902
135110	A. aphrophilus CIP 101918
135329	A. aphrophilus AmMS 115, CIP 103662, ATCC 49146
135766	A. aphrophilus X67, CIP 59.61
135848	A. aphrophilus 901.85, CIP 101967
135978	A. aphrophilus 822.85, CIP 101940
136073	A. aphrophilus 302-86, CIP 102321
136123	A. aphrophilus 630-86, CIP 102617
136149	A. aphrophilus 114.87, CIP 102859
136243	A. aphrophilus CIP 103935
136258	A. aphrophilus 31504-92, CIP 104008
136600	A. aphrophilus 626-86, CIP 102615
137131	A. aphrophilus Funagli, CIP 70.72, ATCC 29241, CCUG 14858, ...
137214	A. aphrophilus 185.87, CIP 102929
137498	A. aphrophilus X104, CIP 64.73
137614	A. aphrophilus CIP 68.11
137628	A. aphrophilus CIP 102378
137730	A. aphrophilus 198.85, CIP 101488
137765	A. aphrophilus 201.85, CIP 101480
137777	A. aphrophilus 624.85, CIP 101796
137786	A. aphrophilus 764.85, CIP 101907
137855	A. aphrophilus 975.85, CIP 102009
137864	A. aphrophilus 828.85, CIP 101956
137880	A. aphrophilus 158-86, CIP 102105
137896	A. aphrophilus 75-86, CIP 102137
137915	A. aphrophilus 121-86, CIP 102178
137937	A. aphrophilus 198-86, CIP 102234
137954	A. aphrophilus 246-86, CIP 102285
137981	A. aphrophilus CIP 102370
137983	A. aphrophilus 350-86, CIP 102372
138035	A. aphrophilus 525.86, CIP 102527
138049	A. aphrophilus 574.86, CIP 102584
138060	A. aphrophilus 614-86, CIP 102608
138606	A. aphrophilus 682.86, CIP 102688
138661	A. aphrophilus 719.84, CIP 101109
138752	A. aphrophilus 736-86, CIP 102769
138755	A. aphrophilus 99.87, CIP 102856
139092	A. aphrophilus LRA 116-07-89, CIP 103707
139673	A. aphrophilus 356-86, CIP 102376
139674	A. aphrophilus CIP 102283
139676	A. aphrophilus 299-86, CIP 102328
141252	A. aphrophilus CCUG 414, ATCC 19415, NCTC 5886
141431	A. aphrophilus CCUG 1802, ATCC 29240, NCTC 10556
141602	A. aphrophilus CCUG 3423
142307	A. aphrophilus CCUG 11575
142391	A. aphrophilus CCUG 12280
142394	A. aphrophilus CCUG 12300
142745	A. aphrophilus CCUG 14377
143784	A. aphrophilus CCUG 21221, MCCM 01597
143962	A. aphrophilus CCUG 22101
144535	A. aphrophilus CCUG 25590
144702	A. aphrophilus CCUG 26314
145286	A. aphrophilus CCUG 28085
146070	A. aphrophilus CCUG 30333
146136	A. aphrophilus CCUG 30433
146593	A. aphrophilus CCUG 31547
146654	A. aphrophilus CCUG 31731
146730	A. aphrophilus CCUG 32034
146916	A. aphrophilus CCUG 32447
147151	A. aphrophilus CCUG 32956
147263	A. aphrophilus CCUG 33223
147303	A. aphrophilus CCUG 33338
147437	A. aphrophilus CCUG 33581
147467	A. aphrophilus CCUG 33618
147518	A. aphrophilus CCUG 33725 A
147521	A. aphrophilus CCUG 33728
147525	A. aphrophilus CCUG 33741
147819	A. aphrophilus CCUG 34290, ATCC 7901
148072	A. aphrophilus CCUG 34772
148161	A. aphrophilus CCUG 34940
148440	A. aphrophilus CCUG 35449
148492	A. aphrophilus CCUG 35546
148816	A. aphrophilus CCUG 36001, MCCM 00211, MCCM 00209, MCCM ...
148817	A. aphrophilus CCUG 36002, MCCM 00358
148818	A. aphrophilus CCUG 36003, MCCM 00210
148819	A. aphrophilus CCUG 36004, MCCM 00596
148820	A. aphrophilus CCUG 36005, MCCM 00652
148821	A. aphrophilus CCUG 36006, MCCM 02164
148822	A. aphrophilus CCUG 36007, MCCM 02404
148823	A. aphrophilus CCUG 36008, MCCM 02785
148824	A. aphrophilus CCUG 36009, MCCM 00284
148825	A. aphrophilus CCUG 36010, MCCM 00220
148826	A. aphrophilus CCUG 36011, MCCM 00268
148827	A. aphrophilus CCUG 36012, MCCM 02455
148828	A. aphrophilus CCUG 36013, MCCM 02740
148939	A. aphrophilus CCUG 36610
148946	A. aphrophilus CCUG 36623
149038	A. aphrophilus CCUG 36762
149312	A. aphrophilus CCUG 37472
149325	A. aphrophilus CCUG 37506
149392	A. aphrophilus CCUG 37633
149425	A. aphrophilus CCUG 37704
149490	A. aphrophilus CCUG 37831
149603	A. aphrophilus CCUG 38047
149839	A. aphrophilus CCUG 38520
149849	A. aphrophilus CCUG 38553
149850	A. aphrophilus CCUG 38554
149851	A. aphrophilus CCUG 38555
149852	A. aphrophilus CCUG 38556
150072	A. aphrophilus CCUG 38948
150079	A. aphrophilus CCUG 38961
150155	A. aphrophilus CCUG 39132
150543	A. aphrophilus CCUG 41544
151187	A. aphrophilus CCUG 43422
151354	A. aphrophilus CCUG 43824
151682	A. aphrophilus CCUG 44626 A
151742	A. aphrophilus CCUG 44769
151862	A. aphrophilus CCUG 45074
152458	A. aphrophilus CCUG 46846
152874	A. aphrophilus CCUG 47840
153099	A. aphrophilus CCUG 48491
153407	A. aphrophilus CCUG 49493
153408	A. aphrophilus CCUG 49494
153563	A. aphrophilus CCUG 50189
153907	A. aphrophilus CCUG 51586
153908	A. aphrophilus CCUG 51587
153910	A. aphrophilus CCUG 51589
154998	A. aphrophilus CCUG 56014
155044	A. aphrophilus CCUG 56235
155122	A. aphrophilus CCUG 56524
155596	A. aphrophilus CCUG 58292
155752	A. aphrophilus CCUG 59211
155939	A. aphrophilus CCUG 59699
156130	A. aphrophilus CCUG 60485

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.087
125438	97.438	negative
125439	96.354	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
59257	positive	growth	37

Physiology and metabolism

Oxygen tolerance

59257

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125438		90.417
125439		99.875

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	+	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	+	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68377	beta-galactosidase	+	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68377	gamma-glutamyltransferase	+	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
59257	-	+	-	-	-	+	-	-	-	-	+	+	-	+	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
59257	-	+	+	+	+	-	-	-	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Plaque

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
59257	Human dental plaque	Homo sapiens	1975	Denmark	DNK	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM313036v1 assembly for Aggregatibacter aphrophilus HK_319	scaffold	GCA_003130365	732.127	2871042306	732	69.29

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM313036v1 assembly for Aggregatibacter aphrophilus HK_319
BV-BRC: 732.127

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	85.18	no
125439	gram_stain	BacteriaNetⓘ	negative	96.35	no
125439	motility	BacteriaNetⓘ	yes	46.93	no
125439	spore_formation	BacteriaNetⓘ	no	99.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aggregatibacter aphrophilus strain HK_319
PATRIC: 732.127

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.44	no
125438	anaerobic	anaerobicⓘ	no	92.56	yes
125438	spore-forming	spore-formingⓘ	no	90.42	no
125438	aerobic	aerobicⓘ	no	84.83	yes
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	92.09	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#59257	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51588
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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