Aggregatibacter aphrophilus CCUG 49494 is a bacterium of the family Pasteurellaceae.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pasteurellales |
| Family Pasteurellaceae |
| Genus Aggregatibacter |
| Species Aggregatibacter aphrophilus |
| Full scientific name Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006 |
| Synonyms (2) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM370374v1 assembly for Aggregatibacter aphrophilus HK83 | contig | 732 | 54.64 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.50 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 56.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.44 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 92.46 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 90.62 | no |
| 125438 | aerobic | aerobicⓘ | no | 84.53 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 91.20 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Aggregatibacteraphrophilus T6SS Effectors in Host-Bacterial Interactions. | Bao K, Oscarsson J, Gehring P, Grossmann J, Belibasakis GN, Bostanci N. | J Dent Res | 10.1177/00220345251337745 | 2025 | |
| Bacterial symbionts in oral niche use type VI secretion nanomachinery for fitness increase against pathobionts. | Oscarsson J, Bao K, Shiratsuchi A, Grossmann J, Wolski W, Aung KM, Lindholm M, Johansson A, Mowsumi FR, Wai SN, Belibasakis GN, Bostanci N. | iScience | 10.1016/j.isci.2024.109650 | 2024 | ||
| Genetics | Protocol for analyzing the function of the type VI secretion system of the oral symbiont Aggregatibacter aphrophilus in targeting pathobionts. | Oscarsson J, Bao K, Shiratsuchi A, Grossmann J, Wolski W, Aung KM, Lindholm M, Johansson A, Mowsumi FR, Wai SN, Belibasakis GN, Bostanci N. | STAR Protoc | 10.1016/j.xpro.2024.103415 | 2024 | |
| Role of OmpA1 and OmpA2 in Aggregatibacter actinomycetemcomitans and Aggregatibacter aphrophilus serum resistance. | Lindholm M, Min Aung K, Nyunt Wai S, Oscarsson J. | J Oral Microbiol | 10.1080/20002297.2018.1536192 | 2019 | ||
| Phylogeny | Fastidious Gram-Negatives: Identification by the Vitek 2 Neisseria-Haemophilus Card and by Partial 16S rRNA Gene Sequencing Analysis. | Sonksen UW, Christensen JJ, Nielsen L, Hesselbjerg A, Hansen DS, Bruun B. | Open Microbiol J | 10.2174/1874285801004010123 | 2010 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #58581 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49494 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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