Strain identifier
version 8.1 (current version)
General
@ref: 58581
BacDive-ID: 153408
keywords: genome sequence, Bacteria, Gram-negative
description: Aggregatibacter aphrophilus CCUG 49494 is a Gram-negative bacterium of the family Pasteurellaceae.
NCBI tax id
- NCBI tax id: 732
- Matching level: species
doi: 10.13145/bacdive153408.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter aphrophilus
- full scientific name: Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006
synonyms
@ref synonym 20215 Haemophilus paraphrophilus 20215 Haemophilus aphrophilus
@ref: 58581
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter aphrophilus
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.958
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.992 |
| 69481 | no | 100 |
Sequence information
Genome sequences
- @ref: 66792
- description: Aggregatibacter aphrophilus strain HK83
- accession: 732.170
- assembly level: wgs
- database: patric
- NCBI tax ID: 732
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 87.368 | no |
| flagellated | no | 94.56 | no |
| gram-positive | no | 98.705 | no |
| anaerobic | no | 95.442 | no |
| aerobic | no | 95.628 | no |
| halophile | no | 65.048 | no |
| spore-forming | no | 98.626 | no |
| thermophile | no | 97.756 | no |
| glucose-util | yes | 53.579 | no |
| glucose-ferment | yes | 58.783 | no |
External links
@ref: 58581
culture collection no.: CCUG 49494
straininfo link
- @ref: 107215
- straininfo: 214661
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 58581 | Curators of the CCUG | https://www.ccug.se/strain?id=49494 | Culture Collection University of Gothenburg (CCUG) (CCUG 49494) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 107215 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID214661.1 |