Strain identifier
version 9.1 (current version)
General
@ref: 58581
BacDive-ID: 153408
keywords: genome sequence, Bacteria, Gram-negative
description: Aggregatibacter aphrophilus CCUG 49494 is a Gram-negative bacterium of the family Pasteurellaceae.
NCBI tax id
- NCBI tax id: 732
- Matching level: species
doi: 10.13145/bacdive153408.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter aphrophilus
- full scientific name: Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006
synonyms
@ref synonym 20215 Haemophilus paraphrophilus 20215 Haemophilus aphrophilus
@ref: 58581
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter aphrophilus
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 91.2 | |
69480 | 97.438 | negative |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 90.617 |
69481 | no | 100 |
Sequence information
Genome sequences
- @ref: 66792
- description: Aggregatibacter aphrophilus strain HK83
- accession: 732.170
- assembly level: wgs
- database: patric
- NCBI tax ID: 732
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.438 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.459 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.617 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 84.533 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91.2 | no |
External links
@ref: 58581
culture collection no.: CCUG 49494
straininfo link
- @ref: 107215
- straininfo: 214661
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
58581 | Curators of the CCUG | https://www.ccug.se/strain?id=49494 | Culture Collection University of Gothenburg (CCUG) (CCUG 49494) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
107215 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID214661.1 |