Name: Aggregatibacter aphrophilus CCUG 414
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141252

Type strain:

Species: Aggregatibacter aphrophilus

Culture col. no.: CCUG 414, ATCC 19415, NCTC 5886

NCBI tax ID(s): 732 (species)

SI-ID 46561

ATCC 19415, NCTC 5886, CCUG 414

Other strains from Aggregatibacter aphrophilus

Section

Aggregatibacter aphrophilus CCUG 414 is a Gram-negative bacterium that was isolated from Human blood,fatal endocarditis.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Aggregatibacter*
	Species	**Aggregatibacter aphrophilus**
	Full Scientific Name (LPSN)	Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006

	Synonym	Haemophilus paraphrophilus
	Synonym	Haemophilus aphrophilus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.897

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	sucrose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	+	3.1.3.1	* from API NH
[Ref.: #68377]	beta-galactosidase	+	3.2.1.23	* from API NH
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #68377]	gamma-glutamyltransferase	+	2.3.2.2	* from API NH
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44194]

Fatty acid	Percentage	ECL
C16:1 ω7c	35.4	15.819
C16:0	30.4	16
C14:0	19.2	14
C14:0 3OH/C16:1 ISO I	9.6	15.485
C18:2 ω6,9c/C18:0 ANTE	1.4	17.724
C18:1 ω9c	1.4	17.769
unknown 14.503	0.8	14.503
C18:0	0.6	18
C13:0 ISO 2OH	0.4	13.814
Unidentified	0.3	15.171
C16:1 ω5c	0.2	15.908
C12:0	0.2	12
C12:0 ALDE ?	0.1	10.915
C12:0 3OH	0.1	13.455
Unidentified	0.1	13.766

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #44194]	2230	-	+	+	+	+	-	-	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44194]	Sample type/isolated from	Human blood,fatal endocarditis
[Ref.: #44194]	Sampling date	1938
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood
#Infection	#Inflammation	-
#Infection	#Patient	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aggregatibacter aphrophilus ATCC 19415	GCA_001680765	scaffold	GenBank	732 tax ID	*
[Ref.: #66792]	Aggregatibacter aphrophilus strain ATCC 19415	732.22	wgs	PATRIC	732 tax ID	*
[Ref.: #66792]	Aggregatibacter aphrophilus ATCC 19415	2814123194	draft	JGI IMG/M	732 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aggregatibacter aphrophilus strain ATCC 19415 PATRIC: 732.22
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aggregatibacter aphrophilus ATCC 19415 NCBI: GCA_001680765.1
[Ref.: #69480]	flagellated	no	94.906	no
[Ref.: #69480]	gram-positive	no	98.419	no
[Ref.: #69480]	anaerobic	no	95.684	no
[Ref.: #69480]	aerobic	no	94.763	no
[Ref.: #69480]	halophile	no	56.512	no
[Ref.: #69480]	spore-forming	no	98.487	no
[Ref.: #69480]	glucose-util	yes	54.313	no
[Ref.: #69480]	thermophile	no	96.009	no
[Ref.: #69480]	motile	no	88.79	no
[Ref.: #69480]	glucose-ferment	yes	57.444	no

Availability in culture collections External links

[Ref.: #44194]

Culture collection no.

CCUG 414, ATCC 19415, NCTC 5886

[Ref.: #96949]

SI-ID 46561

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Epithelial cell invasion by Actinobacillus actinomycetemcomitans strains from restriction fragment-length polymorphism groups associated with juvenile periodontitis or carrier status.	Lepine G, Caudry S, DiRienzo JM, Ellen RP	Oral Microbiol Immunol	10.1111/j.1399-302x.1998.tb00689.x	1998	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44194 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 414

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96949

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46561.1 )

* These data were automatically processed and therefore are not curated

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Aggregatibacter aphrophilus strain ATCC 19415

Aggregatibacter aphrophilus ATCC 19415

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