Name: Streptomyces lavendulae DSM 40069
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15344

Type strain:

Species: Streptomyces lavendulae

Variant: Isotype of BacDive ID 15362

Culture col. no.: DSM 40069, ATCC 14158, ATCC 19777, ATCC 8664, CBS 515.68, DSM 2014, DSM 40213, ETH 4288, IFO 3177, IMRU 3440, IMRU 664, ISP 5069, JCM 4055, JCM 4589, NBRC 3177, NCIB 6959, NCTC 6950, NRRL B-1230, RIA 1057, RIA 144, ATCC 23950, CBS 515.69, IFO 12903, ISP 5213, RIA 744, NBRC 12903, CCM 3010, CCUG 11120, CGMCC 4.1949, HUT 6006, IFM 1031, IFO 12789, JCM 4664, KCTC 19942, MTCC 706, NBRC 12789, NCIMB 9840, NRRL B-2774, NRRL B-5617, RIA 1159, RIA 531, VKM Ac-1278, VKM Ac-624

Strain history: KCC S-0055 <-- T. Yamaguchi (IAM 0009) <-- ATCC 8664 <-- S. A. Waksman IMRU 3440-8.

NCBI tax ID(s): 1303691 (strain), 1914 (species)

SI-ID 35983

LMG 19384, ATCC 14159, DSM 40748, IFO 12348, NCIB 6960, ATCC 14158, NCIB 6959, ATCC 14161, NCIB 8236, ATCC 23950, IFO 12903, ATCC 8664, ATCC 19777, CCM 3010, IFO 3177, IFO 12789, DSM 40069, DSM 2014, DSM 40213, JCM 4055, JCM 4589, NCTC 6950, NRRL B-1230, CCUG 11120, HUT 6006, NCIMB 9840, NRRL B-5617, VKM Ac-1278, VKM Ac-624, JCM 4664, NCIMB 6959, IFO12343, NCIMB10995, NCTC6959, NCIMB 6960, IMET40329, NCIMB10979, NCTC6960, NCIMB 8236, IAM0009, IMET40330, IMI 039045, IMI 039046, IFO 12347, NCIB 9840, VKM Ac-281, CBS 483.48, CBS 414.59, CBS 515.68, KCTC 1398, NBRC 12789, NBRC 12903, NBRC 3177, AS 4.1386, NBRC 12343, NBRC 12347, NBRC 12348, BCRC 12163, CCRC 12163, NCTC 1950, BCRC 13794, CCRC 13794, KCTC 19942, NCIM 2498, NCIM 2499, NCIM 2421, NRRL B-2774, DSM 41573, DSM 41575, CGMCC 4.1386, CGMCC 4.1949

Other strains from Streptomyces lavendulae

S. lavendulae ST033260(HKI),
S. lavendulae IMI 39045
S. lavendulae IMI 39046
S. lavendulae IMI 113143

Section

Streptomyces lavendulae DSM 40069 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lavendulae**
	Full Scientific Name (LPSN)	Streptomyces lavendulae (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces lavendulae"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.661

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 5 MEDIUM (DSMZ Medium 993)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9267]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9267]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.958

[Ref.: #9267]	Name of produced compound	streptothricin
[Ref.: #9267]	Name of produced compound	restriction endonuclease
[Ref.: #20216]	Name of produced compound	Streptothricin
[Ref.: #20216]	Name of produced compound	Endonuclease SlaI

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Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		streptothricin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9267]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces sp. 14 16S ribosomal RNA gene, partial sequence	DQ304486	1154	ENA	361319 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae partial 16S rRNA	X53173	1329	ENA	1914 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae DNA for 16S rRNA, strain IFO 12343	D85111	1514	ENA	1914 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae DNA for 16S rRNA, strain IFO 12789	D85116	1514	ENA	1914 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. lavendulae 16S-23S ribosomal RNA gene spacer, partial sequence	U93347	280	ENA	58340 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. lavendulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4589	D44250	121	ENA	58340 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. lavendulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4664	D44293	120	ENA	58340 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. lavendulae gene for 16S rRNA, partial sequence, strain: NBRC 12789	AB184146	1435	ENA	58340 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae subsp. lavendulae gene for 16S rRNA, partial sequence, strain: NBRC 12903	AB249971	1457	ENA	58340 tax ID	*
[Ref.: #20218]	Streptomyces lavendulae strain NRRL B-1230 16S ribosomal RNA gene, partial sequence	HQ426713	1530	ENA	1914 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces lavendulae subsp. lavendulae NRRL B-2774	GCA_000718155	contig	GenBank	58340 tax ID
[Ref.: #66792]	Streptomyces lavendulae subsp. lavendulae JCM 4055	1303691.7	wgs	PATRIC	1303691 tax ID	*
[Ref.: #66792]	Streptomyces lavendulae lavendulae JCM 4055	2734481950	draft	JGI IMG/M	1303691 tax ID	*
[Ref.: #66792]	Streptomyces lavendulae lavendulae NBRC 12789	2582581651	draft	JGI IMG/M	58340 tax ID	*
[Ref.: #66792]	Streptomyces lavendulae subsp. lavendulae JCM 4055	GCA_001313525	contig	GenBank	1303691 tax ID	*

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GC-content

72.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces lavendulae subsp. lavendulae JCM 4055 PATRIC: 1303691.7
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lavendulae subsp. lavendulae JCM 4055 PATRIC: 1303691.7
[Ref.: #69480]	motile	no	92.053	no
[Ref.: #69480]	gram-positive	yes	85.415	no
[Ref.: #69480]	anaerobic	no	97.947	no
[Ref.: #69480]	halophile	no	91.988	no
[Ref.: #69480]	spore-forming	no	56.658	no
[Ref.: #69480]	thermophile	no	97.852	yes
[Ref.: #69480]	glucose-util	yes	89.175	no
[Ref.: #69480]	aerobic	yes	91.077	no
[Ref.: #69480]	flagellated	no	97.741	no
[Ref.: #69480]	glucose-ferment	no	88.549	no

Availability in culture collections External links

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Culture collection no.

DSM 40069, ATCC 14158, ATCC 19777, ATCC 8664, CBS 515.68, DSM 2014, DSM 40213, ETH 4288, IFO 3177, IMRU 3440, IMRU 664, ISP 5069, JCM 4055, JCM 4589, NBRC 3177, NCIB 6959, NCTC 6950, NRRL B-1230, RIA 1057, RIA 144, ATCC 23950, CBS 515.69, IFO 12903, ISP 5213, RIA 744, NBRC 12903, CCM 3010, CCUG 11120, CGMCC 4.1949, HUT 6006, IFM 1031, IFO 12789, JCM 4664, KCTC 19942, MTCC 706, NBRC 12789, NCIMB 9840, NRRL B-2774, NRRL B-5617, RIA 1159, RIA 531, VKM Ac-1278, VKM Ac-624

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SI-ID 35983

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of four subspecies in the genus Streptomyces to Streptomyces rubradiris sp. nov., Streptomyces asoensis sp. nov., Streptomyces fructofermentans sp. nov. and Streptomyces ossamyceticus sp. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005078	2021	*
Enzymology	A new site-specific endonuclease from Streptomyces lavendulae (SlaI).	Takahashi H, Shimizu M, Saito H, Ikeda Y, Sugisaki H	Gene	10.1016/0378-1119(79)90089-1	1979	*

References

#9267

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40069

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84437

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35983.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces lavendulae subsp. lavendulae JCM 4055

Streptomyces lavendulae subsp. lavendulae JCM 4055

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