Name: Streptomyces lavendofoliae DSM 40217
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15343

Type strain:

Species: Streptomyces lavendofoliae

Culture col. no.: DSM 40217, ATCC 15872, ATCC 23928, CBS 912.68, IFO 12882, INA 3613, ISP 5217, NBRC 12882, RIA 1161, RIA 750, JCM 4391, BCRC 13795, CGMCC 4.1891, NCIMB 9823, NRRL B-3371, VKM Ac-272

Strain history: KCC S-0391 <-- IFO 12882 <-- SAJ <-- ISP 5217 <-- INA 3613.

NCBI tax ID(s): 67314 (species)

SI-ID 36542

ATCC 15872, ATCC 23928, IFO 12882, DSM 40217, JCM 4391, NCIMB 9823, NRRL B-3371, VKM Ac-272, CBS 912.68, NBRC 12882, BCRC 13795, CCRC 13795, NCIB 9823, CGMCC 4.1891, LMG 19935

Section

Streptomyces lavendofoliae DSM 40217 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lavendofoliae**
	Full Scientific Name (LPSN)	Streptomyces lavendofoliae (Kuchaeva et al. 1961) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces lavendofoliae"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.79

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9274]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9274]

Culture medium growth

[Ref.: #9274]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9274]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9274]	growth	28 °C
[Ref.: #18559]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9274]	Temperature range	mesophilic
[Ref.: #18559]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9274]

Name of produced compound

streptothricin complex

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18559]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18559]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18559]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18559]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18559]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18559]	mannitol ChEBI	-
[Ref.: #18559]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18559]	raffinose ChEBI	-
[Ref.: #18559]	rhamnose ChEBI	-
[Ref.: #18559]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18559]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18559]	118	+	+	-	-	+	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9274]	Sample type/isolated from	soil
[Ref.: #9274]	Country	USSR
[Ref.: #9274]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18559]	Biosafety level	1	German classification
[Ref.: #9274]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces lavendofoliae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4391	D44106	120	ENA	67314 tax ID	*
[Ref.: #20218]	Streptomyces lavendofoliae 16S rRNA gene, type strain LMG 19935	AJ781336	1443	ENA	67314 tax ID	*
[Ref.: #20218]	Streptomyces lavendofoliae gene for 16S rRNA, partial sequence, strain: NBRC 12882	AB184217	1476	ENA	67314 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lavendofoliae JCM 4391	GCA_014649735	scaffold	GenBank	67314 tax ID	*
[Ref.: #66792]	Streptomyces lavendofoliae strain JCM 4391	67314.3	wgs	PATRIC	67314 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces lavendofoliae JCM 4391 NCBI: GCA_014649735.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lavendofoliae JCM 4391 NCBI: GCA_014649735.1
[Ref.: #69480]	flagellated	no	98.124	no
[Ref.: #69480]	gram-positive	yes	91.497	no
[Ref.: #69480]	anaerobic	no	99.396	no
[Ref.: #69480]	aerobic	yes	94.37	no
[Ref.: #69480]	halophile	no	93.199	no
[Ref.: #69480]	spore-forming	yes	96.053	no
[Ref.: #69480]	thermophile	no	98.507	no
[Ref.: #69480]	glucose-util	yes	90.624	no
[Ref.: #69480]	motile	no	93.965	no
[Ref.: #69480]	glucose-ferment	no	90.974	no

Availability in culture collections External links

[Ref.: #9274]

Culture collection no.

DSM 40217, ATCC 15872, ATCC 23928, CBS 912.68, IFO 12882, INA 3613, ISP 5217, NBRC 12882, RIA 1161, RIA 750, JCM 4391, BCRC 13795, CGMCC 4.1891, NCIMB 9823, NRRL B-3371, VKM Ac-272

[Ref.: #84436]

SI-ID 36542

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces genisteinicus sp. nov., a novel genistein-producing actinomycete isolated from a Chinese medicinal plant and proposal of Streptomyces michiganensis Corbaz et al. 1957 as a later heterotypic synonym of Streptomyces xanthochromogenes Arishima et al. 1956.	Hu S, Li K, Wang Y, Guo Y, Zhou M, Tang X, Gao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004954	2021	*
Phylogeny	Streptomyces kanasensis sp. nov., an Antiviral Glycoprotein Producing Actinomycete Isolated from Forest Soil Around Kanas Lake of China.	Han L, Zhang G, Miao G, Zhang X, Feng J	Curr Microbiol	10.1007/s00284-015-0900-0	2015	*

References

#9274

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40217

#18559

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84436

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36542.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces lavendofoliae JCM 4391

Streptomyces lavendofoliae JCM 4391

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