Strain identifier

BacDive ID: 15344

Type strain: Yes

Species: Streptomyces lavendulae

Variant: Isotype of BacDive ID 15362

Strain history: KCC S-0055 <-- T. Yamaguchi (IAM 0009) <-- ATCC 8664 <-- S. A. Waksman IMRU 3440-8.

NCBI tax ID(s): 1303691 (strain), 1914 (species)

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General

@ref: 9267

BacDive-ID: 15344

DSM-Number: 40069

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces lavendulae DSM 40069 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1914species
1303691strain

strain history

@refhistory
9267<- E.B. Shirling, ISP <- S.A. Waksman, IMRU
67770KCC S-0055 <-- T. Yamaguchi (IAM 0009) <-- ATCC 8664 <-- S. A. Waksman IMRU 3440-8.

doi: 10.13145/bacdive15344.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lavendulae
  • full scientific name: Streptomyces lavendulae (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces lavendulae

@ref: 9267

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lavendulae subsp. lavendulae

full scientific name: Streptomyces lavendulae subsp. lavendulae (Waksman and Curtis 1916) Pridham 1970

variant: Isotype of BacDive ID 15362

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 99.661

multimedia

  • @ref: 9267
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40069.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlink
9267ISP 5 MEDIUM (DSMZ Medium 993)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium993.pdf
9267STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
9267ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9267positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480no99.958

compound production

@refcompound
9267streptothricin
9267restriction endonuclease
20216Streptothricin
20216Endonuclease SlaI

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite production

  • @ref: 67770
  • Chebi-ID: 26789
  • metabolite: streptothricin
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 9267
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9267
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces sp. 14 16S ribosomal RNA gene, partial sequenceDQ3044861154ena361319
20218Streptomyces lavendulae partial 16S rRNAX531731329ena1914
20218Streptomyces lavendulae DNA for 16S rRNA, strain IFO 12343D851111514ena1914
20218Streptomyces lavendulae DNA for 16S rRNA, strain IFO 12789D851161514ena1914
20218Streptomyces lavendulae subsp. lavendulae 16S-23S ribosomal RNA gene spacer, partial sequenceU93347280ena58340
20218Streptomyces lavendulae subsp. lavendulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4589D44250121ena58340
20218Streptomyces lavendulae subsp. lavendulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4664D44293120ena58340
20218Streptomyces lavendulae subsp. lavendulae gene for 16S rRNA, partial sequence, strain: NBRC 12789AB1841461435ena58340
20218Streptomyces lavendulae subsp. lavendulae gene for 16S rRNA, partial sequence, strain: NBRC 12903AB2499711457ena58340
20218Streptomyces lavendulae strain NRRL B-1230 16S ribosomal RNA gene, partial sequenceHQ4267131530ena1914

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces lavendulae subsp. lavendulae JCM 40551303691.7wgspatric1303691
66792Streptomyces lavendulae lavendulae JCM 40552734481950draftimg1303691
66792Streptomyces lavendulae lavendulae NBRC 127892582581651draftimg58340
67770Streptomyces lavendulae subsp. lavendulae NRRL B-2774GCA_000718155contigncbi58340
66792Streptomyces lavendulae subsp. lavendulae JCM 4055GCA_001313525contigncbi1303691

GC content

  • @ref: 67770
  • GC-content: 72.7
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.053no
gram-positiveyes85.415no
anaerobicno97.947no
halophileno91.988no
spore-formingno56.658no
thermophileno97.852yes
glucose-utilyes89.175no
aerobicyes91.077no
flagellatedno97.741no
glucose-fermentno88.549no

External links

@ref: 9267

culture collection no.: DSM 40069, ATCC 14158, ATCC 19777, ATCC 8664, CBS 515.68, DSM 2014, DSM 40213, ETH 4288, IFO 3177, IMRU 3440, IMRU 664, ISP 5069, JCM 4055, JCM 4589, NBRC 3177, NCIB 6959, NCTC 6950, NRRL B-1230, RIA 1057, RIA 144, ATCC 23950, CBS 515.69, IFO 12903, ISP 5213, RIA 744, NBRC 12903, CCM 3010, CCUG 11120, CGMCC 4.1949, HUT 6006, IFM 1031, IFO 12789, JCM 4664, KCTC 19942, MTCC 706, NBRC 12789, NCIMB 9840, NRRL B-2774, NRRL B-5617, RIA 1159, RIA 531, VKM Ac-1278, VKM Ac-624

straininfo link

  • @ref: 84437
  • straininfo: 35983

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology428725A new site-specific endonuclease from Streptomyces lavendulae (SlaI).Takahashi H, Shimizu M, Saito H, Ikeda Y, Sugisaki HGene10.1016/0378-1119(79)90089-11979Base Sequence, Coliphages/genetics, Cytosine/metabolism, DNA Restriction Enzymes/*isolation & purification, DNA, Viral/analysis/genetics, Recombination, Genetic, Streptomyces/*enzymology/geneticsMetabolism
Phylogeny34787542Reclassification of four subspecies in the genus Streptomyces to Streptomyces rubradiris sp. nov., Streptomyces asoensis sp. nov., Streptomyces fructofermentans sp. nov. and Streptomyces ossamyceticus sp. nov.Komaki H, Tamura TInt J Syst Evol Microbiol10.1099/ijsem.0.0050782021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classificationTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9267Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40069)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40069
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84437Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35983.1StrainInfo: A central database for resolving microbial strain identifiers