Streptomyces fumigatiscleroticus (DSM 43154, ATCC 19345, JCM 3101)

Name: Streptomyces fumigatiscleroticus (DSM 43154, ATCC 19345, JCM 3101)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15209

Type strain

Strain Designation 145

Culture col. no. DSM 43154 ATCC 19345 JCM 3101 KCC A-0101 RIA 884 9 more

NCBI tax ID(s) 66371

Special Collections DSMZ JCM Wink compendium Literature strains

Links

Streptomyces fumigatiscleroticus 145 is a spore-forming, mesophilic prokaryote that builds an aerial mycelium and was isolated from Soil.

spore-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389374

ATCC 19345,DSM 43154,IFO 12999,JCM 3101,CCRC 12344,NCIMB 11004,NRRL B-3856,CBS 639.66,NBRC 12999,BCRC 12344,NCIB 11004,CGMCC 4.1909

@ref 20215

Last LPSN update 2025-12-16 09:50:32

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces fumigatiscleroticus

Full scientific name Streptomyces fumigatiscleroticus (ex Pridham 1970) Goodfellow et al. 1986

Synonyms (2)

Chainia fumigata
"Streptomyces fumigatiscleroticus"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98

Colony morphology

@ref	Colony color	Incubation period	Medium used
19941	Yellow	10-14 days	ISP 2
19941	Yellow/brown	10-14 days	ISP 3
19941	Colorless	10-14 days	ISP 4
19941	Red brown	10-14 days	ISP 5
19941	Colorless	10-14 days	ISP 6
19941	Red brown	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19941	Aerial Mycelium		ISP 2
19941	Aerial Mycelium		ISP 3
19941	Aerial Mycelium	White	ISP 4
19941	Aerial Mycelium	White	ISP 5
19941			ISP 6
19941	Aerial Mycelium	Gray	ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10823	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19941	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19941	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19941	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19941	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19941	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19941	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10823	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10823	positive	growth	28	mesophilic
19941	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore description	Spore formation	Confidence
19941	Formation of spore chains (spirales)(Sp), spore surface smooth
125438			93.483

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19941	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
19941	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
19941	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
19941	17234 ChEBI	glucose	-
68368	25094 ChEBI	lysine	+	degradation	from API 20E
19941	29864 ChEBI	mannitol	+
19941	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
19941	16634 ChEBI	raffinose	+
19941	26546 ChEBI	rhamnose	+
19941	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
19941	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19941	-	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil	Pimpri	India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10823	1	Risk group (German classification) According to TRBA 466
19941	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM1464797v1 assembly for Streptomyces fumigatiscleroticus JCM 3101	scaffold	GCA_014647975	66371.3	2989905182	66371

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces fumigatiscleroticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3101	D43979	121	66371
20218	Streptomyces fumigatiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 12999	AB184248	1474	66371
20218	Streptomyces fumigatiscleroticus strain NRRL B-3856T 16S ribosomal RNA gene, partial sequence	DQ442499	1492	66371
124043	Streptomyces fumigatiscleroticus strain JCM 3101 16S ribosomal RNA gene, partial sequence.	MT760405	1321	66371

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces fumigatiscleroticus JCM 3101
NCBI: GCA_014647975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.70	no
125439	motility	BacteriaNetⓘ	no	83.10	no
125439	gram_stain	BacteriaNetⓘ	positive	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	88.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces fumigatiscleroticus JCM 3101
NCBI: GCA_014647975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.17	yes
125438	anaerobic	anaerobicⓘ	no	96.56	yes
125438	aerobic	aerobicⓘ	yes	88.99	no
125438	spore-forming	spore-formingⓘ	yes	93.48	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	88.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Production, Purification, and Characterization of beta-(1-4)-Endoxylanase of Streptomyces roseiscleroticus.	Grabski AC, Jeffries TW.	Appl Environ Microbiol	10.1128/aem.57.4.987-992.1991	1991
Phylogeny	Isolation and characterization of cellulose-decomposing bacteria inhabiting sawdust and coffee residue composts.	Fathallh Eida M, Nagaoka T, Wasaki J, Kouno K.	Microbes Environ	10.1264/jsme2.me11299	2012
Phylogeny	Streptomyces sediminimaris sp. nov., a novel actinobacterium with anticancer potential isolated from mangrove sediments.	Emthomya N, Chuangrattanawan C, Ngamcharungchit C, Kongsaya T, Kanchanasin P, Phongsopitanun W, Suriyachadkun C, Pidot SJ, Intra B.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006811	2025
Phylogeny	Streptomyces sennicomposti sp. nov., an actinomycete isolated from compost of Senna siamea (Lam.).	Duangupama T, Pittayakhajonwut P, Intaraudom C, Suriyachadkun C, Sirirote P, He YW, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005320	2022

References

#10823	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43154
#19941	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces fumigatiscleroticus (DSM 43154, ATCC 19345, JCM 3101)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014647975

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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