Name: Streptomyces fumanus DSM 40154
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15208

Type strain:

Species: Streptomyces fumanus

Culture col. no.: DSM 40154, ATCC 19904, ATCC 25454, CBS 260.66, CBS 687.69, IFO 13042, INA 10256/54, ISP 5154, JCM 4477, KCC S-0477, NBRC 13042, VKM Ac-1845, BCRC 12058, CGMCC 4.1732, NRRL B-3898, NRRL B-5420, RIA 1234

Strain history: KCC S-0477 <-- IFO 13042 <-- SAJ <-- ISP 5154 <-- INA 10256/54.

NCBI tax ID(s): 67302 (species)

SI-ID 79973

ATCC 19904, ATCC 25454, IFO 13042, DSM 40154, JCM 4477, CCRC 12058, NRRL B-3898, NRRL B-5420, VKM Ac-1845, CBS 260.66, NBRC 13042, BCRC 12058, CGMCC 4.1732, LMG 19882

Section

Streptomyces fumanus DSM 40154 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from alluvial soil of hot and humid area.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces fumanus**
	Full Scientific Name (LPSN)	Streptomyces fumanus (Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces fumanus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.577

[Ref.: #19412]	Colony color	Brown beige
[Ref.: #19412]	Incubation period	10-14 days
[Ref.: #19412]	Cultivation medium used	ISP 2

[Ref.: #19412]	Colony color	Fawn brown
[Ref.: #19412]	Incubation period	10-14 days
[Ref.: #19412]	Cultivation medium used	ISP 3

[Ref.: #19412]	Colony color	Copper brown
[Ref.: #19412]	Incubation period	10-14 days
[Ref.: #19412]	Cultivation medium used	ISP 4

[Ref.: #19412]	Colony color	Salmon orange
[Ref.: #19412]	Incubation period	10-14 days
[Ref.: #19412]	Cultivation medium used	ISP 5

[Ref.: #19412]	Colony color	Beige
[Ref.: #19412]	Incubation period	10-14 days
[Ref.: #19412]	Cultivation medium used	ISP 6

[Ref.: #19412]	Colony color	Brown beige
[Ref.: #19412]	Incubation period	10-14 days
[Ref.: #19412]	Cultivation medium used	ISP 7

[Ref.: #19412]	Multicellular complex forming ability	yes
[Ref.: #19412]	Multicellular complex name	Aerial Mycelium
[Ref.: #19412]	Multicellular complex color	Cream
[Ref.: #19412]	Medium Name (multicellularity)	ISP 2

[Ref.: #19412]	Multicellular complex forming ability	yes
[Ref.: #19412]	Multicellular complex name	Aerial Mycelium
[Ref.: #19412]	Multicellular complex color	Cream
[Ref.: #19412]	Medium Name (multicellularity)	ISP 3

[Ref.: #19412]	Multicellular complex forming ability	yes
[Ref.: #19412]	Multicellular complex name	Aerial Mycelium
[Ref.: #19412]	Multicellular complex color	Cream
[Ref.: #19412]	Medium Name (multicellularity)	ISP 4

[Ref.: #19412]	Multicellular complex forming ability	yes
[Ref.: #19412]	Multicellular complex name	Aerial Mycelium
[Ref.: #19412]	Medium Name (multicellularity)	ISP 5

[Ref.: #19412]	Multicellular complex forming ability	no
[Ref.: #19412]	Medium Name (multicellularity)	ISP 6

[Ref.: #19412]	Multicellular complex forming ability	no
[Ref.: #19412]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9353]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9353]	growth	28 °C
[Ref.: #19412]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9353]	Temperature range	mesophilic
[Ref.: #19412]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19412]	277	+	-	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19412]	350	not determinedn.d.	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9353]	Sample type/isolated from	alluvial soil of hot and humid area
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Hot	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9353]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19412]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces fumanus partial 16S rRNA gene, strain ISP 5154	AJ399463	1448	ENA	67302 tax ID	*
[Ref.: #20218]	Streptomyces fumanus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4477	D44172	120	ENA	67302 tax ID	*
[Ref.: #20218]	Streptomyces fumanus gene for 16S rRNA, partial sequence, strain: NBRC 13042	AB184273	1477	ENA	67302 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces fumanus JCM 4477	GCA_014655295	scaffold	GenBank	67302 tax ID	*
[Ref.: #66792]	Streptomyces fumanus strain JCM 4477	67302.3	wgs	PATRIC	67302 tax ID	*

[Ref.: #67770]

GC-content

72.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces fumanus JCM 4477 NCBI: GCA_014655295.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces fumanus JCM 4477 NCBI: GCA_014655295.1
[Ref.: #69480]	motile	no	94.459	no
[Ref.: #69480]	flagellated	no	97.623	no
[Ref.: #69480]	gram-positive	yes	90.729	no
[Ref.: #69480]	anaerobic	no	98.624	no
[Ref.: #69480]	aerobic	yes	94.803	no
[Ref.: #69480]	halophile	no	95.547	no
[Ref.: #69480]	spore-forming	yes	96.712	no
[Ref.: #69480]	glucose-util	yes	89.564	no
[Ref.: #69480]	thermophile	no	96.41	no
[Ref.: #69480]	glucose-ferment	no	86.983	no

Availability in culture collections External links

[Ref.: #9353]

Culture collection no.

DSM 40154, ATCC 19904, ATCC 25454, CBS 260.66, CBS 687.69, IFO 13042, INA 10256/54, ISP 5154, JCM 4477, KCC S-0477, NBRC 13042, VKM Ac-1845, BCRC 12058, CGMCC 4.1732, NRRL B-3898, NRRL B-5420, RIA 1234

[Ref.: #84306]

SI-ID 79973

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces triticagri sp. nov. and Streptomyces triticirhizae sp. nov., two novel Actinobacteria isolated from the rhizosphere soil of wheat (Triticum aestivum L.).	Han C, Yu Z, Zhao J, Shi H, Hu J, Yu B, Song J, Shen Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003727	2020	*
Phylogeny	Streptomyces andamanensis sp. nov., isolated from soil.	Sripreechasak P, Tamura T, Shibata C, Suwanborirux K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000987	2016	*

References

#9353

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40154

#19412

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84306

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID79973.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces fumanus JCM 4477

Streptomyces fumanus JCM 4477

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