Name: Streptomyces filipinensis 114-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15140

Type strain:

Species: Streptomyces filipinensis

Strain Designation: 114-8

Culture col. no.: DSM 40112, ATCC 23905, CBS 309.56, CBS 801.68, DSM 41155, ETH 20722, ETH 28584, ETH 28594, IFO 12860, ISP 5112, JCM 4369, KCC S-0369, NBRC 12860, NRRL 2437, RIA 1124, BCRC 11472, CGMCC 4.1452, LMG 19333, VKM Ac-966

Strain history: KCC S-0369 <-- IFO 12860 <-- SAJ <-- ISP 5112 <-- D. Gottlieb 114-8.

NCBI tax ID(s): 66887 (species)

SI-ID 13345

LMG 19333, ATCC 23905, CCRC 11472, DSM 40112, IFO 12860, JCM 4369, NRRL B-2437, VKM Ac-966, NRRL 2437, DSM 41155, CBS 309.56, CBS 801.68, AS 4.1452, NBRC 12860, BCRC 11472, UAMH 4943, CGMCC 4.1452

Special Collections

Other strains from Streptomyces filipinensis

Section

Streptomyces filipinensis 114-8 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces filipinensis**
	Full Scientific Name (LPSN)	Streptomyces filipinensis Ammann et al. 1955 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.007

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9323]	growth	28 °C
[Ref.: #18538]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.185

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.868
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

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Name of produced compound

filipin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18538]		NaCl		maximum	2.5	%

[Ref.: #18538]	Name of tolerated compound	Lysozyme
[Ref.: #18538]	Tolerance percentage	0.1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18538]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18538]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18538]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18538]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18538]	mannitol ChEBI	+
[Ref.: #18538]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18538]	raffinose ChEBI	+
[Ref.: #18538]	rhamnose ChEBI	-
[Ref.: #18538]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18538]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	filipin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18538]	98	-	-	-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9323]	Sample type/isolated from	soil
[Ref.: #9323]	Country	Philippines
[Ref.: #9323]	Country ISO 3 Code	PHL
[Ref.: #9323]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AY999913 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	19
Soil Samples	547
Animal Samples	29
Plant Samples	192
Total Samples	787

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18538]	Biosafety level	1	German classification
[Ref.: #9323]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces filipinensis gene for 16S rRNA, partial sequence	AB122733	564	GenBank ENA	66887 tax ID	*
[Ref.: #20218]	Streptomyces filipinensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4369	D44086	120	GenBank ENA	66887 tax ID	*
[Ref.: #20218]	Streptomyces filipinensis gene for 16S rRNA, partial sequence, strain: NBRC 12860	AB184198	1470	GenBank ENA	66887 tax ID	*
[Ref.: #20218]	Streptomyces filipinensis strain NRRL 2437 16S ribosomal RNA gene, partial sequence	AY999913	1367	GenBank ENA	66887 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces filipinensis JCM 4369	GCA_014649495	scaffold	GenBank ENA	66887 tax ID	*
[Ref.: #66792]	Streptomyces filipinensis strain JCM 4369	66887.5	wgs	PATRIC	66887 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces filipinensis JCM 4369 NCBI: GCA_014649495.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces filipinensis JCM 4369 NCBI: GCA_014649495.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.007	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.845	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.185	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.868	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.9	no

Availability in culture collections External links

[Ref.: #9323]

Culture collection no.

DSM 40112, ATCC 23905, CBS 309.56, CBS 801.68, DSM 41155, ETH 20722, ETH 28584, ETH 28594, IFO 12860, ISP 5112, JCM 4369, KCC S-0369, NBRC 12860, NRRL 2437, RIA 1124, BCRC 11472, CGMCC 4.1452, LMG 19333, VKM Ac-966

[Ref.: #84244]

SI-ID 13345

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces barringtoniae sp. nov., isolated from rhizosphere of plant with antioxidative potential.	Wai KZ, Luechapudiporn R, Tedsree N, Phongsopitanun W, Malisorn K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005364	2022	*
Phylogeny	Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera.	Mo P, Liu J, Zhao Y, Xu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004556	2020	*
Phylogeny	Streptomyces fodineus sp. nov., an actinobacterium with antifungal activity isolated from mine area soil.	Kim MK, Kang HJ, Roh SG, Park JS, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.003353	2019	*
Phylogeny	Streptomyces yaanensis sp. nov., isolated from soil.	Zheng J, Zhang X, Xin Y, Han X, Ni S, Zhang J	Int J Syst Evol Microbiol	10.1099/ijs.0.054734-0	2013	*

References

#9323

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40112

#18538

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84244

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13345.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces filipinensis JCM 4369

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