Streptomyces filamentosus 1-C-9 is a mesophilic prokaryote that builds an aerial mycelium and produces antibiotic compounds.
antibiotic compound production mesophilic genome sequence 16S sequence
SI-ID 45632
| @ref 20215 |
|
Last LPSN update
2026-02-09 11:21:36 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces filamentosus |
| Full scientific name Streptomyces filamentosus Okami and Umezawa 1953 (Approved Lists 1980) |
| Synonyms (1) |
| BacDive ID | Other strains from Streptomyces filamentosus (3) | Type strain |
|---|---|---|
| 128263 | S. filamentosus ST028370(HKI), Prs188, | |
| 128264 | S. filamentosus ST032173(HKI), | |
| 159104 | S. filamentosus DSM 40122, CBS 941.68, ATCC 23958, IAUR 4192, ... |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9222 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19387 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19387 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19387 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19387 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19387 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19387 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 9222 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | Medium recipe at MediaDive | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 98.5 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19387 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 19387 | 62968 ChEBI | cellulose | +/- | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 19387 | 28757 ChEBI | fructose | +/- | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 19387 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 19387 | 29864 ChEBI | mannitol | +/- | ||
| 19387 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 19387 | 16634 ChEBI | raffinose | +/- | ||
| 19387 | 26546 ChEBI | rhamnose | + | ||
| 19387 | 17992 ChEBI | sucrose | + | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 19387 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
Global distribution of 16S sequence AB184130 (>99% sequence identity) for Streptomyces from Microbeatlas 
 Aquatic Samples |
8 |
 Soil Samples |
45 |
 Animal Samples |
19 |
 Plant Samples |
19 |
| Total Samples | 91 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1465489v1 assembly for Streptomyces filamentosus JCM 4122 | contig | GCA_014654895   | 67294.5  | 8113702447  | 67294 | 78 | |
| 124043 | ASM4243100v1 assembly for Streptomyces filamentosus JCM 4122 | scaffold | GCA_042431005 | 67294 | 44.13 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces filamentosus gene for 16S rRNA, partial sequence | AB122741 | 564 |  | 67294 | |
| 20218 | Streptomyces filamentosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4576 | D44244 | 120 | | 67294 | |
| 20218 | Streptomyces filamentosus gene for 16S rRNA, partial sequence, strain: NBRC 12767 | AB184130 | 1473 | | 67294 | |
| 20218 | Streptomyces filamentosus strain NRRL B-2114 16S ribosomal RNA gene, partial sequence | DQ026632 | 1344 | | 67294 | |
| 124043 | Streptomyces filamentosus strain JCM 4122 16S ribosomal RNA gene, partial sequence. | MT760482 | 1313 | | 67294 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Strain Improvement Program of Streptomyces roseosporus for Daptomycin Production. | Rubio S, Martinez-Camara S, de la Fuente JL, Rodriguez-Saiz M, Barredo JL. | Methods Mol Biol | 10.1007/978-1-0716-1358-0_20 | 2021 | |
| Enzymology | An Improved Transformation-Associated Recombination Cloning Approach for Direct Capturing of Natural Product Biosynthetic Gene Clusters. | Kurylenko O, Palusczak A, Luzhetskyy A, Rebets Y. | Microb Biotechnol | 10.1111/1751-7915.70067 | 2024 | |
| Biomimetic Total Synthesis and Paired Omics Identify an Intermolecular Diels-Alder Reaction as the Key Step in Lugdunomycin Biosynthesis. | Uiterweerd MT, Nunez Santiago I, Cunha AV, Havenith RWA, Du C, Zhang L, van der Heul HU, Elsayed SS, Minnaard AJ, van Wezel GP. | J Am Chem Soc | 10.1021/jacs.5c01883 | 2025 | | |
| Metabolism | Bioactivity Screening and Gene-Trait Matching across Marine Sponge-Associated Bacteria. | Gavriilidou A, Mackenzie TA, Sanchez P, Tormo JR, Ingham C, Smidt H, Sipkema D. | Mar Drugs | 10.3390/md19020075 | 2021 | |
| Discovery and characterization of genes conferring natural resistance to the antituberculosis antibiotic capreomycin. | Toh SI, Elaine Keisha J, Wang YL, Pan YC, Jhu YH, Hsiao PY, Liao WT, Chen PY, Ko TM, Chang CY. | Commun Biol | 10.1038/s42003-023-05681-6 | 2023 | | |
| Multiplexed in-situ mutagenesis driven by a dCas12a-based dual-function base editor. | Wu Y, Li Y, Liu Y, Xiu X, Liu J, Zhang L, Li J, Du G, Lv X, Chen J, Ledesma-Amaro R, Liu L. | Nucleic Acids Res | 10.1093/nar/gkae228 | 2024 | | |
| Plant Growth Promoting Rhizobacteria in Plant Health: A Perspective Study of the Underground Interaction. | Bhat MA, Mishra AK, Jan S, Bhat MA, Kamal MA, Rahman S, Shah AA, Jan AT. | Plants (Basel) | 10.3390/plants12030629 | 2023 | | |
| Stress | Structural and dynamic characterization of a freestanding acyl carrier protein involved in the biosynthesis of cyclic lipopeptide antibiotics. | Paul S, Ishida H, Nguyen LT, Liu Z, Vogel HJ. | Protein Sci | 10.1002/pro.3138 | 2017 | |
| Pathogenicity | High diversity and abundance of cultivable tetracycline-resistant bacteria in soil following pig manure application. | Kang Y, Li Q, Yin Z, Shen M, Zhao H, Bai Y, Mei L, Hu J. | Sci Rep | 10.1038/s41598-018-20050-8 | 2018 | |
| Can intracellular Staphylococcus aureus in osteomyelitis be treated using current antibiotics? A systematic review and narrative synthesis. | Zelmer AR, Nelson R, Richter K, Atkins GJ. | Bone Res | 10.1038/s41413-022-00227-8 | 2022 | | |
| Metabolism | Sequencing and analysis of the biosynthetic gene cluster of the lipopeptide antibiotic Friulimicin in Actinoplanes friuliensis. | Muller C, Nolden S, Gebhardt P, Heinzelmann E, Lange C, Puk O, Welzel K, Wohlleben W, Schwartz D. | Antimicrob Agents Chemother | 10.1128/aac.00942-06 | 2007 | |
| Phylogeny | Streptomyces xinjiangensis sp. nov., an actinomycete isolated from Lop Nur region. | Cheng C, Li YQ, Asem MD, Lu CY, Shi XH, Chu X, Zhang WQ, Di An D, Li WJ | Arch Microbiol | 10.1007/s00203-016-1234-4 | 2016 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive15139.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
License